Return to main results Retrieve Phyre Job Id

Job DescriptionP43329
Confidence98.91%DateThu Jan 5 12:02:17 GMT 2012
Rank117Aligned Residues294
% Identity18%Templatec3dmqA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:rna polymerase-associated protein rapa; PDBTitle: crystal structure of rapa, a swi2/snf2 protein that2 recycles rna polymerase during transcription
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   96...100.........110....... ..120.........130.........140.........150........ .160......
Predicted Secondary structure 






.















........






Query SS confidence 





















.








































. . . . . . . .







Query Sequence  VIVAGETGSGKTTQLPKICMEL. GRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKV. . . . . . . . RFSDHVSD
Query Conservation 


 












 


 .
    
 
  







 


 


 


  

  


 
........


   
 
Alig confidence 





















.













.....





















........







Template Conservation   













   
            


 
 ..... 
  

  
                             
Template Sequence  VLLADEVGLGKTIEAGXILHQQLLSGAAERVLIIVPE. . . . . TLQHQWLVEXLRRFNLRFALFDDERYAEAQHDAYNPFD
Template Known Secondary structure 


TTS
TSS




T.....TTS





TT
SSST
Template Predicted Secondary structure 













.....















Template SS confidence 















































































   173......180.........190.........200......... 210.........220.........230.........240.......
 
   167..170.........180......... 190.........200. ........210.........220.........230..
Predicted Secondary structure 









..






.









...........
Query SS confidence 






















. .











.






























. . . . . . . . . . .
Query Sequence  NTMVKLMTDGILLAEIQQDRLLM. . QYDTIIIDEAHE. RSLNIDFLLGYLKELLPRRPDLKIIITSATI. . . . . . . . . . .
Query Conservation   
 
   








  

 
 .. 

 







.


 

 

 


 

  
 










...........
Alig confidence 






















..











.






























...........
Template Conservation      

 
   
         
    

 






 
 
     
        
       






  
   
   
Template Sequence  TEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGXESHFAR
Template Known Secondary structure  T
S
TSTTTTTS




SS



BTTB

TT
SSS
SS
SSS
SS
T
Template Predicted Secondary structure 




























Template SS confidence 















































































   248.250.........260.........270.........280.........290.........300.........310.........320.......
 
   233......240..
Predicted Secondary structure  ..........

............................................................
Query SS confidence  . . . . . . . . . .









. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . DPERFSRHFN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ..........
 
 
  

 ............................................................
Alig confidence  ..........









............................................................
Template Conservation 
  
 
        
                                                                 
Template Sequence  LRLLDPNRFHDFAQFVEEQKNYCPVADAVAXLLAGNKLSNDELNXLGEXIGEQDIEPLLQAANSDSEDAQSARQELVSXL
Template Known Secondary structure 
TTT
SSTTTTTS



GGGTTSSTTTT
TT
SSTTGGGT


SS
STTT
Template Predicted Secondary structure 









Template SS confidence 















































































   328.330.........340.........350.........360.........370.........380.........390.........400.......
 
   243......250.........260.. .......270....
Predicted Secondary structure  ..............










..................................







Query SS confidence  . . . . . . . . . . . . . .



















. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .











Query Sequence  . . . . . . . . . . . . . . NAPIIEVSGRTYPVEVRYRP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IVEEADDTERDQ
Query Conservation  .............. 



 
 

 




 
 
..................................          
 
Alig confidence  ..............



















..................................











Template Conservation                                                                                  
Template Sequence  XDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIXGARKSAEDRARDXLYPERIYQEFEGDNATWWNF
Template Known Secondary structure  GGG
TTTTT


TTT












TT

SSGGGGT
SGGGTTTTTSSS

TTTT
Template Predicted Secondary structure 




































Template SS confidence 















































































   408.410.........420.........430.........440.........450.........460.........470.........480.......
 
   275....280.........290.........300.........310.........320.........330....... ..340.........350
Predicted Secondary structure 



















....







Query SS confidence 






























































. . . .












Query Sequence  LQAIFDAVDELSQESHGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQ. . . . SHSGRRIVLATNV
Query Conservation     
   
  
     








  

      
         





 

  

  

 ....
   








Alig confidence 







































..




















....












Template Conservation    

  
   
      





    
   
   
    ..
       
      
      
         



  
Template Sequence  DPRVEWLXGYLTSHRSQKVLVICAKAATALQLEQVLRERE. . GIRAAVFHEGXSIIERDRAAAWFAEEDTGAQVLLCSEI
Template Known Secondary structure  STSSS



SSTTTT..



TTS
TTSTTSS

S

Template Predicted Secondary structure 








..














Template SS confidence 















































































   488.490.........500.........510.........520....... ..530.........540.........550.........560.....
 
   351........360.........370.........380.........390.........400 .........410....
Predicted Secondary structure 






















...







Query SS confidence 

















































. . .













Query Sequence  AETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRC. . . GRVSEGICIRLYSE
Query Conservation 









 






 
   

       
    





 





...


  
 






Alig confidence 













........



..........













...













Template Conservation 

 




 
  

........  

..........



   





  



   
 
      
Template Sequence  GSEGRNFQFASHXV. . . . . . . . XFDL. . . . . . . . . . PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLE
Template Known Secondary structure  TT
SS

TT

........
SS
..........
SSTTS
SSS
S

T
Template Predicted Secondary structure 










........

..........










Template SS confidence 


































































   566...570......... 580... ......590.........600.........610....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions