Job Description P43329 Confidence 98.87% Date Thu Jan 5 12:02:17 GMT 2012 Rank 123 Aligned Residues 210 % Identity 19% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.			.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		E	Q	Q	K	L	T	F	T	A	L	Q	Q	R	L	.	.	D	S	L	M	L	R	D	R	L	R	F	S	R	R	L	H	G	V	K	K	V	K	N	P	D	A	Q	Q	A	I	F	Q	E	M	A	K	E	I	D	Q	A	A	G	K	V	L	L	R	E	A	A	R	P	E	I	T	Y	P	D	N	L	P	V	S
Query Conservation																.	.
Alig confidence																.	.																																																			.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.
Template Sequence		K	D	V	D	K	A	L	D	E	L	E	I	D	L	L	E	A	D	V	A	L	E	V	V	D	A	L	R	E	K	I	K	Q	K	L	V	G	K	K	V	R	I	G	T	D	K	G	K	I	I	E	E	A	V	K	E	A	V	S	E	I	L	E	T	S	R	.	.	.	.	.	.	.	.	.	R	I	D	L	I
Template Known Secondary structure																	T	T	T																		T	T					T	T	S																		T			S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.										110	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		Q	K	K	Q	D	I	L	E	A	I	R	D	H	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	T	Q	L	P	K	I	C	M	E	L	.	G	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T	E	P	G	G	C	I	G	Y	K	V	R
Query Conservation																																							.
Alig confidence			.	.	.	.																																	.																															.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.																																																																.	.	.	.	.	.	.	.	.	.
Template Sequence		E	.	.	.	.	E	I	R	K	A	E	K	P	Y	V	I	M	F	V	G	F	N	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	N	H	G	F	S	V	V	I	A	A	S	D	T	F	R	A	G	A	I	E	Q	L	E	E	H	A	K	R	I	G	.	.	.	.	.	.	.	.	.	.	V	K
Template Known Secondary structure			.	.	.	.				T	S		S										T	T	S	S															T	T										T	T															T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.																																																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		115					.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.											.	180
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	D	H	V	S	D	N	T	M	V	K	L	M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	R	R	P	D	L	K	I	I	I	T	S	A	T	I	D	P	E	R	F	S	R
Query Conservation
Alig confidence											.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.
Template Sequence		V	I	K	H	S	Y	G	A	D	.	.	.	.	.	.	P	A	A	V	A	Y	D	A	I	Q	H	A	K	A	R	G	I	D	V	V	L	I	D	T	A	G	R	S	E	T	N	R	N	L	M	D	E	M	K	K	I	A	R	V	T	K	P	N	L	V	I	F	V	G	D	A	L	A	G	N	A	I	V	E	Q
Template Known Secondary structure						S	T	T			.	.	.	.	.	.																T		S								S	S			S	S	S																S								T	T		T	T	T
Template Predicted Secondary structure											.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.							190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		255	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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