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Job DescriptionP43329
Confidence99.52%DateThu Jan 5 12:02:17 GMT 2012
Rank59Aligned Residues302
% Identity21%Templatec3dl8B_
PDB info PDB header:protein transportChain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca
Resolution7.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   85....90.........100.........110.........120.........130....... ..140.........150.........160..
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Query Sequence  DILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAART. . VANRIAEELKTEPGGCIGYKVRFSD
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Template Sequence  QLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEK
Template Known Secondary structure  TSS

SSSS
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B

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   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   163......170........ .180... ......190.........200
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Query Sequence  HVSDNTMVKLMTDGIL. . . . LAEIQ. . . . QDRLLMQYDTIIIDEAH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTL
Template Known Secondary structure  SSTTT
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   165....170.........180.........190.........200.........210.........220.........230.........240....
 
   201........210.........220...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ERSLNIDFLLGYLKELLPRRPDL. . . . . . . . . . . . . . . . . . .
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Template Sequence  KAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLM
Template Known Secondary structure  S
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   245....250.........260.........270.........280.........290.........300.........310.........320....
 
   224.....230.. .......240.........250.........260
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KIIITSATI. . DPERFSRHFNNAPIIEVSGRTYPVEVRY
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Template Sequence  KGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYN. MQVVTIPT. NRPVVRDD
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   325....330.........340.........350.........360.........370.........380...... ...390.... .....400..
 
   261........270.........280.........290.........300.........310.........320.........330.........340
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Query Sequence  RPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHS
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Template Sequence  RPDLI. . YRTMEGKFKAVAEDVAQRYMTGQP. VLVGTVAVETSELISKLLKNK. . . GIPHQVLNAKNHEREAQIIEEAGQ
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SSTT

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   403.... ..410.........420.........430. ........440.........450.. .......460.........470......
 
   341........350....... ..360. ........370.........380.........390.........400.........410..
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Query Sequence  GRRIVLATNVAETSLTV. . . PGIK. . . . . YVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLY
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Template Sequence  KGAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHE. . . . . . . . . . . . . . . . . . SRRIDNQLRGRSGRQGDPGITQFY
Template Known Secondary structure  SS
TTTSS






SSGGGSSS
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   477..480.........490.........500.........510.... .....520.........530........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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