|   |
85 | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | |
|
. | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | I | L | E | A | I | R | D | H | Q | V | V | I | V | A | G | E | T | G | S | G | K | T | T | Q | L | P | K | I | C | M | E | L | G | R | G | I | K | G | L | I | G | H | T | Q | P | R | R | L | A | A | R | T | . |
. |
V | A | N | R | I | A | E | E | L | K | T | E | P | G | G | C | I | G | Y | K | V | R | F | S | D |
Query Conservation |   |
|
|
|   |
|
|   |   |
|
|
|
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|   |
|   |   |   |   |
|   |
|   |   |
|
|
|
|
|
|
|
|   |
| . | . |
|
|   |
|
|
|   |
|
|
|   |   |
|
|   |   |
|
|
|   |
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |   |   |
|   |   |
|   |
|
|
|
|   |
|
|
|
|
|
|
|   |   |   |
|
|
|   |
|   |
|
|   |
|   |   |
|   |
|
|
|   |
|   |
|
|
|   |
|
|   |
|   |   |   |   |
|   |   |   |
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |
|
Template Sequence |   |
Q | L | M | G | G | V | A | L | H | D | G | N | I | A | E | M | K | T | G | E | G | K | T | L | T | S | T | L | P | V | Y | L | N | A | L | T | G | K | G | V | H | V | V | T | V | N | E | Y | L | A | S | R | D | A | E | Q | M | G | K | I | F | E | F | L | G | L | T | V | G | L | N | L | N | S | M | S | K | D | E | K |
Template Known Secondary structure |   |
T |  |  |  |  |  |  |  |  |  | S | S |  |  |
|
| S | S | S | S |
| T |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |
|  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  | T | T |
|
|
|
| B |
|
| S | S |
|
| S | S |
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
85 | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . |
  |
  |   |
163 | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | |
|
|
|
. | 180 | . | . | . | |
|
|
|
. | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  | . | . | . | . |  |  |  |  |  | . | . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
H | V | S | D | N | T | M | V | K | L | M | T | D | G | I | L | . |
. |
. |
. |
L | A | E | I | Q | . |
. |
. |
. |
Q | D | R | L | L | M | Q | Y | D | T | I | I | I | D | E | A | H | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
  |   |
|   |   |
|   |
|   |   |   |
|
|
|
|
| . | . | . | . |
|
|
|
|   | . | . | . | . |   |
|
|   |
|   |   |
|
|   |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |
|   |   |
|
|   |
|   |
|   |   |   |
|   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|   |   |
|
Template Sequence |   |
R | E | A | Y | A | A | D | I | T | Y | S | T | N | N | E | L | G | F | D | Y | L | R | D | N | M | V | L | Y | K | E | Q | M | V | Q | R | P | L | H | F | A | V | I | D | E | V | D | S | I | L | I | D | E | A | R | T | P | L | I | I | S | G | Q | A | A | K | S | T | K | L | Y | V | Q | A | N | A | F | V | R | T | L |
Template Known Secondary structure |   |
 |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
| S |
| S |
|
|
|
|
|
|
|
|
|
|  |  |  |  | T | T | T | T | T | T | T |
|
| S |
|
|
| B |
|
|
|
|
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
165 | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . |
  |
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
201 | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | R | S | L | N | I | D | F | L | L | G | Y | L | K | E | L | L | P | R | R | P | D | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|   |
|
|   |
|
|   |
|
|
|   |
|
|   |   |
|   |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|   |   |
|   |   |   |   |   |   |
|
|
|   |   |   |   |
|   |
|
|
|
|   |
|
|
|   |   |
Template Sequence |   |
K | A | E | K | D | Y | T | Y | D | I | K | T | K | A | V | Q | L | T | E | E | G | M | T | K | A | E | K | A | F | G | I | D | N | L | F | D | V | K | H | V | A | L | N | H | H | I | N | Q | A | L | K | A | H | V | A | M | Q | K | D | V | D | Y | V | V | E | D | G | Q | V | V | I | V | D | S | F | T | G | R | L | M |
Template Known Secondary structure |   |
 |  | S |
| S | T | T |
|
|
| S | S | S |
|
|
|
|
|  |  |  |  |  |  |  |  |  | S | S |
|
|
| S |
|
|
| T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
| T | T | T | S |
| B |
| T | T | T |
|
| B |
| B |
| T | T | T |
| S |
| B |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
245 | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . |
  |
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
224 | . | . | . | . | . | 230 | . | . | |
|
. | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
|
|
|
| . | . |
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | I | I | I | T | S | A | T | I | . |
. |
D | P | E | R | F | S | R | H | F | N | N | A | P | I | I | E | V | S | G | R | T | Y | P | V | E | V | R | Y |
Query Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . |
|   |
|   |
|   |   |
|
|   |   |
|
|
|
|   |
|   |
|
|   |
|
|
|
|
|   |
|
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|   |
|
|
|
|
|
|
|
|
|
|   |
|   |
|   |   |   |   |   |
|
|
|
|
|
|   |
|   |   |
|   |   |
|   |
|
|   |
|
|
|
|
|
|   |
|
|   |   |
|   |   |   |   |
|   | . |
|   |
|
|   |
|
|
| . |   |
|   |   |   |
|   |
|
Template Sequence |   |
K | G | R | R | Y | S | E | G | L | H | Q | A | I | E | A | K | E | G | L | E | I | Q | N | E | S | M | T | L | A | T | I | T | F | Q | N | Y | F | R | M | Y | E | K | L | A | G | M | T | G | T | A | K | T | E | E | E | E | F | R | N | I | Y | N | . |
M | Q | V | V | T | I | P | T | . |
N | R | P | V | V | R | D | D |
Template Known Secondary structure |   |
| S |
|
| S |
| T | T |  |  |  |  |  |  |  |  |  | S |
|
|
|
|
|
|
|
|
| B |
|
|
|
|
|
|
|
|
| T | T | S | S |
|  |  |  |  | S |
|
|
| S |  |  |  |  |  |  |  |  | T | T |
| . |
|
|
|
|
|
|
|
| . | S | S | T | T |
| S |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |
|
| . |
|
|
|  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
325 | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | |
. | . | . | 390 | . | . | . | . | |
. | . | . | . | . | 400 | . | . |
  |
  |   |
261 | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | P | I | V | E | E | A | D | D | T | E | R | D | Q | L | Q | A | I | F | D | A | V | D | E | L | S | Q | E | S | H | G | D | I | L | I | F | M | S | G | E | R | E | I | R | D | T | A | D | A | L | N | K | L | N | L | R | H | T | E | I | L | P | L | Y | A | R | L | S | N | S | E | Q | N | R | V | F | Q | S | H | S |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |
|
|
|
|
|
|
|
|
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |
|
|   |   |
|
|   |   |
|
|   |
|   |   |
Alig confidence |   |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
| . | . |   |   |   |   |   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |
|
|
| . |
|
|
|
|
|   |
|
|   |   |
|
|   |
|   |   |   |
|   |   |   | . | . | . |
|
|   |   |   |
|
|
|
|   |   |   |   |   |
|   |   |
|
|   |   |
|
|   |
Template Sequence |   |
R | P | D | L | I | . |
. |
Y | R | T | M | E | G | K | F | K | A | V | A | E | D | V | A | Q | R | Y | M | T | G | Q | P | . |
V | L | V | G | T | V | A | V | E | T | S | E | L | I | S | K | L | L | K | N | K | . |
. |
. |
G | I | P | H | Q | V | L | N | A | K | N | H | E | R | E | A | Q | I | I | E | E | A | G | Q |
Template Known Secondary structure |   |
 |  |  |  |  | . | . |  |
| S | S | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| . |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | T |
|
|
|  |  |  | S | S | S |
|  |  |  |  |  |  |  |  |  |  | S | S | S |
Template Predicted Secondary structure |   |
|
|
|
|  | . | . |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
403 | . | . | . | . | |
|
. | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | |
. | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | |
|
|
. | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . |
  |
  |   |
341 | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | |
|
|
. | . | 360 | . | |
|
|
|
|
. | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|  |  | . | . | . | . | . |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | R | R | I | V | L | A | T | N | V | A | E | T | S | L | T | V | . |
. |
. |
P | G | I | K | . |
. |
. |
. |
. |
Y | V | I | D | P | G | T | A | R | I | S | R | Y | S | Y | R | T | K | V | Q | R | L | P | I | E | P | I | S | Q | A | S | A | N | Q | R | K | G | R | C | G | R | V | S | E | G | I | C | I | R | L | Y |
Query Conservation |   |
  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|   | . | . | . | . | . |
|
|
|
|
|
|
|   |
|   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |   |   |
|
|
|
|
|
|   |
|
|
|
|
|
|
|
|
|   |   |
|   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|   |   |   |
|   |   |   |
|
|
|
|
|
|   |
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |
|
|
|   |
|
|   |
|
|
|
|
|
|
|   |
|
|
|
|   |   |   |
Template Sequence |   |
K | G | A | V | T | I | A | T | N | M | A | G | R | G | T | D | I | K | L | G | E | G | V | K | E | L | G | G | L | A | V | V | G | T | E | R | H | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | R | R | I | D | N | Q | L | R | G | R | S | G | R | Q | G | D | P | G | I | T | Q | F | Y |
Template Known Secondary structure |   |
S | S |
|  |  |  |  |  | T | T | T | S | S |
|
|
|
|
|
|
| S | S | G | G | G | S | S | S |
|  |  |  |  | S | S |
|
| S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | S |  |  |  |  |  |  |  |  |  | T | S |
| S | S | S |
|
|
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
477 | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . |
  |