Job Description P43329 Confidence 97.77% Date Thu Jan 5 12:02:17 GMT 2012 Rank 155 Aligned Residues 170 % Identity 16% Template c3dinB_ PDB info PDB header:membrane protein, protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase Resolution 4.50 Å

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		224	.	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		K	I	I	I	T	S	A	T	I	.	.	D	P	E	R	F	S	R	H	F	N	N	A	P	I	I	E	V	S	G	R	T	Y	P	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	T	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S	Q	E	S	H	G	D	I	L	I	F	M	S	G	E	R
Query Conservation											.	.
Alig confidence											.	.											.									.														.	.																									.
Template Conservation																							.									.														.	.																									.
Template Sequence		K	L	A	G	M	T	G	T	A	K	T	E	E	S	E	F	V	Q	V	Y	G	.	M	E	V	V	V	I	P	T	.	H	K	P	M	I	R	K	D	H	D	D	L	V	.	.	F	R	T	Q	K	E	K	Y	E	K	I	V	E	E	I	E	K	R	Y	K	K	G	Q	P	.	V	L	V	G	T	T	S	I	E
Template Known Secondary structure							S			S										T	S		.									.	S	S	T	T		S								.	.			S	S	T																T	T			.						S	S
Template Predicted Secondary structure																							.									.														.	.																									.
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.		440	.	.	.	.	.	.	.	.	.	450	.	.			.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.		.	.	.	480	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	R	D	T	A	D	A	L	N	K	L	N	L	R	H	T	E	I	L	P	L	Y	A	R	L	S	N	S	E	Q	N	R	V	F	Q	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y	V	I	D	P	G	T	A	R	I	S	R	Y	S	Y	R	T	K	V	Q
Query Conservation
Alig confidence																			.	.	.																																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.																																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	S	E	L	L	S	S	M	L	K	K	K	G	I	P	H	Q	.	.	.	V	L	N	A	K	Y	H	E	K	E	A	E	I	V	A	K	A	G	Q	K	G	M	V	T	I	A	T	N	M	A	G	R	G	T	D	I	K	L	G	P	G	V	A	E	L	G	.	.	.	.	.	.	.	.	.	.	.	G	L	C
Template Known Secondary structure													T						.	.	.			S	S	S												S	S	S	S	S							G	G	G	S	S	S							S	S	G	G	G	S	S	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																			.	.	.																																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.				.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.												.	550	.
		382	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		R	L	P	I	E	.	P	I	S	Q	A	S	A	N	Q	R	K	G	R	C	G	R	V	S	E	G	I	C	I	R	L	Y
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		I	I	G	T	E	R	H	E	S	R	R	I	D	N	Q	L	R	G	R	A	G	R	Q	G	D	P	G	E	S	I	F	F
Template Known Secondary structure					S	S			S	S										T	S			T	T
Template Predicted Secondary structure
Template SS confidence
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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