Job Description P43329 Confidence 99.97% Date Thu Jan 5 12:02:17 GMT 2012 Rank 21 Aligned Residues 387 % Identity 15% Template c3bxzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:preprotein translocase subunit seca; PDBTitle: crystal structure of the isolated dead motor domains from2 escherichia coli seca Resolution 3.00 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		K	L	T	F	T	A	L	Q	Q	R	L	D	S	L	M	L	R	D	R	L	R	F	S	R	R	L	H	G	V	.	K	K	V	K	N	P	D	A	Q	Q	A	I	F	Q	E	M	A	K	E	I	D	Q	A	A	G	K	V	L	L	R	E	A	A	R	P	E	I	T	Y	P	D	N	L	P	V	S	Q	K	K	Q
Query Conservation																															.
Alig confidence																															.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	K	V	V	N	I	I	N	A	M	E	P	E	M	E	K	L	S	D	E	E	L	K	G	K	T	A	E	F	R	A	R	L	E	K	G	E	V	L	E	N	L	I	P	E	A	F	A	V	V	R	E	A	S	K	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	M	R	H	F	D	V
Template Known Secondary structure											T					T	T	S							T											T	T			G	G	G	S																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.																.	80	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		D	I	L	E	A	I	R	D	H	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	T	Q	L	P	K	I	C	M	E	L	G	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	.	.	.	N	R	I	A	E	E	L	K	T	E	P	G	G	C	I	G	Y	K	V	R	F	S
Query Conservation																																																									.	.	.
Alig confidence																																				.																					.	.	.
Template Conservation																																				.
Template Sequence		Q	L	L	G	G	M	V	L	N	E	R	C	I	A	E	M	R	T	G	E	G	K	T	L	T	A	T	L	P	A	Y	L	N	A	.	L	T	G	K	G	V	H	V	V	T	V	N	D	Y	L	A	Q	R	D	A	E	N	N	R	P	L	F	E	F	L	G	L	T	V	G	I	N	L	P	G	M	P	A	P	A
Template Known Secondary structure									T	T	T	T							T	T	S						T								T	.	T	S	S	S							S	S										T	T							T	T								T	T
Template Predicted Secondary structure																																				.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.									.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.														.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.														.	.	.	.
Query Sequence		D	H	V	S	D	N	T	M	V	K	L	M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	L	.	.	.	.	.	.	.	.	L	M	Q	Y	D	T	I	I	I	D	E	A	H	.	.	.	.	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	R	R	P	D	L	K	I	I	I	T	S
Query Conservation																												.	.	.	.	.	.	.	.														.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation
Template Sequence		K	R	E	A	Y	A	A	D	I	T	Y	G	T	N	N	E	Y	G	F	D	Y	L	R	D	N	M	A	F	S	P	E	E	R	V	Q	R	K	L	H	Y	A	L	V	D	E	V	D	S	I	L	I	D	E	A	R	T	P	L	I	I	L	A	S	I	T	F	Q	N	Y	F	R	L	Y	E	K	L	A	G	M	T
Template Known Secondary structure								S	S																		T		S	S	G	G	G					S								T						T	G	G	G	S												G	G	G	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		A	T	I	.	.	D	P	E	R	F	S	R	H	F	N	N	A	P	I	I	E	V	S	G	R	T	Y	P	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	T	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S	Q	E	S	H	G	D	I	L	I	F	M	S	G	E	R	E	I	R	D	T	A
Query Conservation					.	.
Alig confidence					.	.											.																			.	.	.																												.
Template Conservation																	.																			.	.	.																												.
Template Sequence		G	T	A	D	T	E	A	F	E	F	S	S	I	Y	K	.	L	D	T	V	V	V	P	T	N	R	P	M	I	R	K	D	L	P	.	.	.	D	L	V	Y	M	T	E	A	E	K	I	Q	A	I	I	E	D	I	K	E	R	T	A	K	G	Q	P	.	V	L	V	G	T	I	S	I	E	K	S	E	L	V	S
Template Known Secondary structure		S			S	T	T	T	T						S		.									S	S									.	.	.					S	S																			T			.						S	S
Template Predicted Secondary structure																	.																			.	.	.																												.
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.				.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.		.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	L	N	K	L	N	L	R	H	T	E	I	L	P	L	Y	A	R	L	S	N	S	E	Q	N	R	V	F	Q	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y	V	I	D	P	G	T	A	R	I	S	R	Y	S	Y	R	T	K	V	Q	R	L	P	I	E	P
Query Conservation
Alig confidence								.	.	.
Template Conservation								.	.	.
Template Sequence		N	E	L	T	K	A	.	.	.	G	I	K	H	N	V	L	N	A	K	F	H	A	N	E	A	A	I	V	A	Q	A	G	Y	P	A	A	V	T	I	A	T	N	M	A	G	R	G	T	D	I	V	L	G	G	S	W	Q	A	E	V	A	A	L	E	N	P	T	A	E	Q	I	E	K	I	K	A	D	W	Q	V
Template Known Secondary structure							T	.	.	.	S								S	S										T	T	T	T	S	S	S							T	T	S	S	T	T					T	T			T					T	T		S				T	T	T	T					T	T
Template Predicted Secondary structure								.	.	.
Template SS confidence
		467	.	.	470	.	.				.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
		388																				.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	A	S	A	N	Q	R	K	G	R	C	G	R	V	S	.	E	G	I	C	I	R	L	Y	S	E	D	D
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence		R	H	D	A	V	L	E	A	G	G	L	H	I	I	G	T	E	R	H	E	S	R	R	I	D	N	Q	L	R	G	R	S	G	R	Q	G	D	A	G	S	S	R	F	Y	L	S	M	E	D
Template Known Secondary structure									T	T	S						S	S			S	S	T	T								T	S	S	G	G	G											G	G	G
Template Predicted Secondary structure
Template SS confidence
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.