Job Description P43329 Confidence 100.00% Date Thu Jan 5 12:02:17 GMT 2012 Rank 19 Aligned Residues 510 % Identity 20% Template c2zj2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative ski2-type helicase; PDBTitle: archaeal dna helicase hjm apo state in form 1 Resolution 2.40 Å

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		80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure											.																																																										.	.
Query SS confidence											.																																																										.	.
Query Sequence		S	Q	K	K	Q	D	I	L	E	.	A	I	R	D	H	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	T	Q	L	P	K	I	C	M	E	L	G	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	.	.	L	K	T	E	P	G	G	C	I	G	Y
Query Conservation											.																																																										.	.
Alig confidence											.																																																										.	.											.
Template Conservation																																																																																	.
Template Sequence		Y	P	P	Q	A	E	A	L	K	S	G	I	L	E	G	K	N	A	L	I	S	I	P	T	A	S	G	K	T	L	I	A	E	I	A	M	V	H	R	I	L	T	Q	G	G	K	A	V	Y	I	V	P	L	K	A	L	A	E	E	K	F	Q	E	F	Q	D	W	E	K	I	G	L	R	V	A	M	A	T	G	.
Template Known Secondary structure										T	T	T	G	G	G	T							S		G	G	G	T																		S							S	S	T	T	S								T	G	G	G	G	G	G	T								S	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.		.
Predicted Secondary structure																																.																																	.															.
Query SS confidence																																.																																	.															.
Query Sequence		K	V	R	F	S	D	H	V	S	D	N	T	M	V	K	L	M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	.	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	.	R	R	P	D	L	K	I	I	I	T	S	A	T	I	.	D
Query Conservation																																.																																	.															.
Alig confidence																																.																.	.																.															.
Template Conservation																																																.	.
Template Sequence		D	Y	D	S	K	D	E	W	L	G	K	Y	D	I	I	I	A	T	A	E	K	F	D	S	L	L	R	H	G	S	S	W	I	K	D	V	K	I	L	V	A	D	E	I	H	L	.	.	I	G	S	R	D	R	G	A	T	L	E	V	I	L	A	H	M	L	G	K	A	Q	I	I	G	L	S	A	T	I	G	N
Template Known Secondary structure				S				G	G	G	G	G		S																T		G	G	G	G	G								T	G	G	G	.	.	G	G		T	T	T												B	T	T	B										S
Template Predicted Secondary structure																																																.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	R	F	S	R	H	F	N	N	A	P	I	I	E	V	S	G	R	T	Y	P	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	T	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S	Q	E	S	H	G	D	I	L	I	F	M	S	G	E	R	E	I	R	D	T	A	D	A	L	N	K	L
Query Conservation
Alig confidence											.
Template Conservation											.
Template Sequence		P	E	E	L	A	E	W	L	N	.	A	E	L	I	V	S	D	W	R	P	V	K	L	R	R	G	V	F	Y	Q	G	F	V	T	W	E	D	G	S	I	D	R	F	S	S	W	E	E	L	V	Y	D	A	I	R	K	K	K	G	A	L	I	F	V	N	M	R	R	K	A	E	R	V	A	L	E	L	S	K	K
Template Known Secondary structure									T	T	.										S	S									T	T					T	T	S						S	S	T										T	T								S	S
Template Predicted Secondary structure											.
Template SS confidence
		182	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		314	.	.	.	.	.																															320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Query Sequence		N	L	R	H	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	P	L	Y	A	R	L	S	N	S	E	Q	N	R	V	F	Q	.	.	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.																	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.
Template Sequence		V	K	S	L	L	T	K	P	E	I	R	A	L	N	E	L	A	D	S	L	E	E	N	P	T	N	E	K	L	A	K	A	I	R	G	G	V	A	F	H	H	A	G	L	G	R	D	E	R	V	L	V	E	E	N	F	R	K	G	I	I	K	A	V	V	A	T	P	T	L	S	T	.	.	.	.	.	P	A	F
Template Known Secondary structure			G	G	G																S			S												T	T						T	T	S														T	T	S	S							S	T	T			.	.	.	.	.		B	S
Template Predicted Secondary structure																																																																										.	.	.	.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.						.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.				.	.	.	.	.	410	.	.	.	.	.	.	.	.				.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure																																													.	.	.															.	.	.															.	.	.
Query SS confidence																																													.	.	.															.	.	.															.	.	.
Query Sequence		Y	V	I	D	P	G	T	A	R	I	S	R	Y	S	Y	R	T	K	V	Q	R	L	P	I	E	P	I	S	Q	A	S	A	N	Q	R	K	G	R	C	G	R	V	S	.	.	.	E	G	I	C	I	R	L	Y	S	E	D	D	F	L	.	.	.	S	R	P	E	F	T	D	P	E	I	L	R	T	N	.	.	.
Query Conservation																																													.	.	.															.	.	.															.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.																			.	.	.															.	.	.															.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.
Template Sequence		R	V	I	I	R	D	I	W	R	Y	S	D	F	G	M	E	.	.	.	.	.	.	.	.	.	R	I	P	I	I	E	V	H	Q	M	L	G	R	A	G	R	P	K	Y	D	E	V	G	E	G	I	I	V	S	T	S	D	D	P	R	E	V	M	N	H	Y	I	F	G	K	P	E	K	L	F	S	Q	L	S	N
Template Known Secondary structure								S					T	T				.	.	.	.	.	.	.	.	.												T	T	B			T	T	T		S									S	S	S										T	S	S									T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.										.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
					433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.														.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	L	A	S	V	I	L	Q	M	T	A	L	G	L	G	D	I	A	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	V	E	A	P	D	K	R	N	I	Q	D	G	V	R	L	L	E	E	L	G	A	I	T	T	D	E	Q	A	S	A	Y	K	L	T	P	L	G	R	Q	L	S	Q	L
Query Conservation		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation																																																																		.
Template Sequence		E	S	N	L	R	S	Q	V	L	A	L	I	A	T	F	G	Y	S	T	V	E	E	I	L	K	F	I	S	N	T	F	Y	A	Y	Q	R	K	D	T	Y	S	L	E	E	K	I	R	N	I	L	Y	F	L	L	E	N	E	F	I	E	I	S	L	E	.	D	K	I	R	P	L	S	L	G	I	R	T	A	K	L
Template Known Secondary structure																S				S										T	S					T	T																				T	T	S					T	T	.
Template Predicted Secondary structure																																																																		.
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.		.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
		497	.	.	500	.	.	.	.	.	.	.	.					.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.						.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.																																												.	.	.	.	.
Query SS confidence														.	.	.	.																																												.	.	.	.	.
Query Sequence		P	V	D	P	R	L	A	R	M	V	L	E	.	.	.	.	A	Q	K	H	G	C	V	R	E	A	M	I	I	T	S	A	L	S	I	Q	D	P	R	E	R	P	M	D	K	Q	Q	A	S	D	E	K	H	R	R	F	H	D	K	.	.	.	.	.	E	S	D	F	L	A	F	V	N	L	W	N	Y	L	G	E
Query Conservation														.	.	.	.																																												.	.	.	.	.
Alig confidence														.	.	.	.																																												.	.	.	.	.
Template Conservation
Template Sequence		Y	I	D	P	Y	T	A	K	M	F	K	D	K	M	E	E	V	V	K	D	P	N	P	I	G	I	F	H	L	I	S	L	T	P	D	I	T	P	F	N	Y	S	K	R	E	F	E	R	L	E	E	E	Y	Y	E	F	K	D	R	L	Y	F	D	D	P	Y	I	E	R	K	F	F	R	A	F	K	T	A	L	V
Template Known Secondary structure		T																			S											T	T	S	T	T	S							T	T	T												T	T	T	S	S		S		S
Template Predicted Secondary structure
Template SS confidence
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	K	A	L	S	S	N	A	F	R	R	L	C	R	T	D	Y	L	N	Y	L	R	V	R	E	W	Q	D	I	Y	T	Q	L	R	Q	V	V	K	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	A	W	I	N	E	V	P	E	G	E	I	V	E	K	Y	S	V	E	P	G	D	I	Y	R	I	V	E	T	A	E	W	L	V	Y	S	L	K	E	I
Template Known Secondary structure							T	T											T			T	T
Template Predicted Secondary structure
Template SS confidence
		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.