Job Description P43329 Confidence 99.83% Date Thu Jan 5 12:02:17 GMT 2012 Rank 39 Aligned Residues 297 % Identity 22% Template c2z0mA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:337aa long hypothetical atp-dependent rna PDBTitle: crystal structure of hypothetical atp-dependent rna2 helicase from sulfolobus tokodaii Resolution 1.90 Å

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		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	K	K	Q	D	I	L	E	A	I	R	D	H	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	T	Q	L	P	K	I	C	M	E	L	G	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T	E	P	G	G	C	I	G	Y	K	V	R
Query Conservation
Alig confidence																																									.	.	.	.
Template Conservation																																									.	.	.	.
Template Sequence		T	E	V	Q	S	K	T	I	P	L	M	L	Q	G	K	N	V	V	V	R	A	K	T	G	S	G	K	T	A	A	Y	A	I	P	I	L	E	L	G	.	.	.	.	M	K	S	L	V	V	T	P	T	R	E	L	T	R	Q	V	A	S	H	I	R	D	I	G	R	Y	M	D	T	K	V	A	E	V	Y	G	G
Template Known Secondary structure														T	T									T	T	S	S													T	.	.	.	.								S	S															T	T	T	S									T	T
Template Predicted Secondary structure																																									.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure							.	.	.	.																							.
Query SS confidence							.	.	.	.																							.
Query Sequence		F	S	D	H	V	.	.	.	.	S	D	N	T	M	V	K	L	M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	.	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	R	R	P	D	L	K	I	I	I	T	S	A	T	I	D	P
Query Conservation							.	.	.	.																							.
Alig confidence							.	.	.	.																							.																.
Template Conservation																																																	.
Template Sequence		M	P	Y	K	A	Q	I	N	R	V	R	N	A	D	I	V	V	A	T	P	G	R	L	L	D	L	W	S	K	G	V	I	D	L	S	S	F	E	I	V	I	I	D	E	A	D	L	.	M	F	E	M	G	F	I	D	D	I	K	I	I	L	A	Q	T	S	N	R	K	I	T	G	L	F	S	A	T	I	P	E
Template Known Secondary structure		S										T	T		S															T	T	S			G	G	G		S						S				.				T	T													T	T		S							S
Template Predicted Secondary structure																																																	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
					235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	E	R	F	S	R	H	F	N	N	A	P	I	I	E	V	S	G	R	T	Y	P	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	T	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S	Q	E	S	H	G	D	I	L	I	F	M	S	G	E	R	E	I	R	D	T	A	D	A	L	N
Query Conservation		.	.	.
Alig confidence		.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	R	K	V	V	K	D	F	I	T	N	Y	E	E	I	E	A	C	I	G	L	A	N	V	E	H	K	F	V	H	V	K	D	D	W	.	.	.	.	.	.	.	.	.	.	.	R	S	K	V	Q	A	L	R	E	N	K	D	K	G	V	I	V	F	V	R	T	R	N	R	V	A	K	L	V	R	L	F	D
Template Known Secondary structure											S		S							S	G	G	G	G	G									S	S	S	S	.	.	.	.	.	.	.	.	.	.	.									T				S	S						S										T	T		T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.												.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		K	L	N	L	R	H	T	E	I	L	P	L	Y	A	R	L	S	N	S	E	Q	N	R	V	F	Q	.	.	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y	V	I	D	P	G	T	A	R	I	S	R	Y	S	Y	R	T	K	V	Q	R	L	P	I	E	P	I	S
Query Conservation																												.	.
Alig confidence			.	.	.	.	.	.	.																			.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	.	.	.	.	.	.	.	A	I	E	L	R	G	D	L	P	Q	S	V	R	N	R	N	I	D	A	F	R	E	G	E	Y	D	M	L	I	T	T	D	V	A	S	R	G	L	D	I	P	L	V	E	K	V	I	N	F	D	A	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D
Template Known Secondary structure		T	.	.	.	.	.	.	.						T	T	S														T	T	S		S										T	T						B	S					S	S			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure			.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242								.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.																			.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		Q	A	S	A	N	Q	R	K	G	R	C	G	R	V	.	S	E	G	I	C	I	R	L	Y	S	E	D	D	F
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence		L	R	T	Y	I	H	R	I	G	R	T	G	R	M	G	R	K	G	E	A	I	T	F	I	L	N	E	Y	W
Template Known Secondary structure										T	T	B		G	G	G										S	S
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions