Job Description P43329 Confidence 99.38% Date Thu Jan 5 12:02:17 GMT 2012 Rank 65 Aligned Residues 307 % Identity 13% Template c2w74B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:type i restriction enzyme ecor124ii r protein; PDBTitle: mutant (k220r) of the hsdr subunit of the ecor124i2 restriction enzyme in complex with atp Resolution 2.74 Å

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		80	.	.	.	.	.	.	.	.	.	90	.	.											.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.																.
Query SS confidence															.	.	.	.	.	.	.	.	.	.																.
Query Sequence		S	Q	K	K	Q	D	I	L	E	A	I	R	D	.	.	.	.	.	.	.	.	.	.	H	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	.	T	Q	L	P	K	I	C	M	E	L	G	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T
Query Conservation															.	.	.	.	.	.	.	.	.	.																.
Alig confidence															.	.	.	.	.	.	.	.	.	.																.
Template Conservation
Template Sequence		I	A	A	T	E	R	I	L	W	K	I	K	S	S	F	T	A	K	N	W	S	K	P	E	S	G	G	Y	I	W	H	T	T	G	S	G	K	T	L	T	S	F	K	A	A	R	L	A	T	E	L	D	F	I	D	K	V	F	F	V	V	D	R	K	D	L	D	Y	Q	T	M	K	E	Y	Q	R	F	S	P	D
Template Known Secondary structure																		T	T			S	S	G	G	G	S							T	T	S	S													T	T		T	T										G	G	G											T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		E	P	G	G	C	I	G	Y	K	V	R	F	S	D	H	V	S	D	N	T	M	V	K	L	M	T	D	G	I	L	L	A	E	I	Q	Q	.	.	.	D	R	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	R	R	P	D	L	K	I
Query Conservation																																						.	.	.
Alig confidence																																						.	.	.																	.								.	.	.	.
Template Conservation																																																									.								.	.	.	.
Template Sequence		S	V	N	G	S	E	N	T	A	G	L	K	R	N	L	D	K	D	D	N	K	I	I	V	T	T	I	Q	K	L	N	N	L	M	K	A	E	S	D	L	P	V	Y	N	Q	Q	V	V	F	I	F	D	E	C	H	.	R	S	Q	F	G	E	A	.	.	.	.	Q	K	N	L	K	K	K	F	K	R	Y	Y	Q
Template Known Secondary structure				S	S	S										T	T		T	T																			S			G	G	G	G	S								S			.								.	.	.	.									S
Template Predicted Secondary structure																																																									.								.	.	.	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.		.	.	.	.	.	.	.					.	420	.	.	.	.	.	.	.	.	.	430	.
		226	.	.	.	230	.	.	.	.	.	.								.	.	.	240	.	.	.	.	.	.	.	.	.	250								.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.															.	.	.	.	.	.	.																																					.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.															.	.	.	.	.	.	.																																					.	.	.	.	.
Query Sequence		I	I	T	S	A	T	I	D	P	E	R	.	.	.	.	.	.	.	F	S	R	H	F	N	N	A	P	I	I	E	V	S	.	.	.	.	.	.	.	G	R	T	Y	P	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	T	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S	.	.	.	.	.
Query Conservation													.	.	.	.	.	.	.															.	.	.	.	.	.	.																																					.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.								.							.	.	.	.	.	.	.																																					.	.	.	.	.
Template Conservation																											.
Template Sequence		F	G	F	T	G	T	P	I	F	P	E	N	A	L	G	S	E	T	T	A	S	V	F	G	R	.	E	L	H	S	Y	V	I	T	D	A	I	R	D	E	K	V	L	K	F	K	V	D	Y	N	D	V	R	P	Q	F	K	S	L	E	T	E	R	I	Q	E	I	T	Q	Y	I	L	N	N	F	R	Q	K	T	H
Template Known Secondary structure						S	S				G	G	G		T	T	S									S	.													T	T	S	S												T	T	T	T	T	T	T																				T
Template Predicted Secondary structure																											.
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.		.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
						287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.																																.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure		.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	Q	E	S	H	G	D	I	L	I	F	M	S	G	E	R	E	I	R	D	T	A	D	A	L	N	K	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	H	T	E	I	L	P	L	Y	A	R	L	S	N	S	E
Query Conservation		.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	T	F	P	G	S	K	G	F	N	A	M	L	A	V	S	S	V	D	A	A	K	A	Y	Y	A	T	F	K	P	L	R	I	A	T	I	F	S	F	A	G	E	I	S	D	E	T	F	D	T	A	K	E	F	L	D	A	A	I	R	E	Y	N	S	H	F	K	T	N	F	S	T	D	S	N	G	F	Q	N	Y
Template Known Secondary structure				S	T	T											S	S																															S																			T					S	S
Template Predicted Secondary structure
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
		332	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.	.	.
Predicted Secondary structure								.	.																																																																				.
Query SS confidence								.	.																																																																				.
Query Sequence		Q	N	R	V	F	Q	.	.	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y	V	I	D	P	G	T	A	R	I	S	R	Y	S	Y	R	T	K	V	Q	R	L	P	I	E	P	I	S	Q	A	S	A	N	Q	R	K	G	R	C	G	R	V	S	.	E	G	I	C
Query Conservation								.	.																																																																				.
Alig confidence								.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	R	D	L	A	Q	R	V	K	N	Q	D	I	D	L	L	I	V	V	G	M	F	L	T	G	F	D	A	P	T	L	N	T	L	F	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	L	R	Y	H	G	L	M	Q	A	F	S	R	T	N	R	I	Y	D	A	T	K	T
Template Known Secondary structure											T	T	S	S	S					S	S	T	T	S	S	S				T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S												G	G	G						T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		638	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.																				.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
		409	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	G	N
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		699	700	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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