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Job DescriptionP43329
Confidence99.81%DateThu Jan 5 12:02:17 GMT 2012
Rank42Aligned Residues304
% Identity17%Templatec2vsxA_
PDB info PDB header:translation/hydrolaseChain: A: PDB Molecule:atp-dependent rna helicase eif4a; PDBTitle: crystal structure of a translation initiation complex
Resolution2.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   80.........90.........100........ .110.........120.........130.........140.........150.......
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Query Sequence  SQKKQDILEAIRDHQVVIVAGETGSGKTT. . QLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYK
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Template Sequence  SAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMA. LAFHMDIKVHA.
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   46...50.........60.........70.........80.........90.........100.........110.. .......120...
 
   158.160.........170.........180.........190.........200.........210.........220.........230....
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Query Sequence  VRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDP. . .
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Template Sequence  . . . . CIGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVL
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   124.....130.........140.........150.........160.........170.........180.........190.........
 
   235....240.........250.........260.........270.........280.........290.........300.........310....
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Query Sequence  ERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGEREIRDTADALNKLN
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Template Sequence  EVTTKFMRNPVRILVKKDELTLEGIKQ. . . . . FYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND.
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   210.........220.........230...... ...240.........250.........260.........270.........280...
 
   315....320.........330....... ..340.........350.........360.........370.........380.........390..
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Query Sequence  LRHTEILPLYARLSNSEQNRVFQ. . SHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQAS
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Template Sequence  . . KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA. . . . . . . . . . . . . . . . . . NKEN
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   284.....290.........300.........310.........320.........330......... 340...
 
   393......400.........410.........420
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Query Sequence  ANQRKGRCGRVSEGICIRLYSEDDFLSR
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Template Sequence  YIHRIGRKGV. . . . . AINFVTNEDVGAM
Template Known Secondary structure  G


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   344.....350... ......360......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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