Job Description P43329 Confidence 97.39% Date Thu Jan 5 12:02:17 GMT 2012 Rank 166 Aligned Residues 205 % Identity 16% Template c2vsfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:dna repair helicase rad3 related protein; PDBTitle: structure of xpd from thermoplasma acidophilum Resolution 2.9 Å

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		224	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure											.																								.	.	.																.
Query SS confidence											.																								.	.	.																.
Query Sequence		K	I	I	I	T	S	A	T	I	.	D	P	E	R	F	S	R	H	F	N	N	A	P	I	I	E	V	S	G	R	T	Y	P	.	.	.	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	T	.	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S	Q	E	S	H	G	D	I	L	I	F	M	S
Query Conservation											.																								.	.	.																.
Alig confidence											.																								.	.	.																.
Template Conservation
Template Sequence		K	T	I	H	M	S	G	T	L	D	P	F	D	F	Y	S	D	I	T	G	F	E	I	P	F	K	K	I	G	E	I	F	P	P	E	N	R	Y	I	A	Y	Y	D	G	V	S	S	K	Y	D	T	L	D	E	K	E	L	D	R	M	A	T	V	I	E	D	I	I	L	K	V	K	K	N	T	I	V	Y	F	P
Template Known Secondary structure								S				S									T									S					G	G	G							S	S	S			S	S	S	S																						S							S
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360			.	.	.	.	.	.	.
Predicted Secondary structure																																										.																							.	.								.	.	.	.	.	.	.	.
Query SS confidence																																										.																							.	.								.	.	.	.	.	.	.	.
Query Sequence		G	E	R	E	I	R	D	T	A	D	A	L	N	K	L	N	L	R	H	T	E	I	L	P	L	Y	A	R	L	S	N	S	E	Q	N	R	V	F	Q	S	.	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	.	.	K	Y	V	I	D	P	G	.	.	.	.	.	.	.	.
Query Conservation																																										.																							.	.								.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.																						.											.	.	.										.	.								.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.																																	.	.	.
Template Sequence		S	Y	S	L	M	D	R	V	E	N	R	V	S	.	.	.	.	.	.	F	E	H	M	K	E	Y	R	G	I	D	Q	K	E	L	Y	S	M	L	K	K	F	R	R	D	H	G	T	I	F	A	V	.	.	.	S	G	G	R	L	S	E	G	N	E	L	E	M	I	I	L	A	G	L	P	F	P	R	P	D	A
Template Known Secondary structure		S													.	.	.	.	.	.	S							T	T																S								.	.	.	T	T	S	G	G	G											S	S						S
Template Predicted Secondary structure															.	.	.	.	.	.																																	.	.	.
Template SS confidence
		457	.	.	460	.	.	.	.	.	.	.	.	.							470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.				.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
			368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.			.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure		.																									.	.
Query SS confidence		.																									.	.
Query Sequence		.	T	A	R	I	S	R	Y	S	Y	R	T	K	V	Q	R	L	P	I	E	P	I	S	Q	A	.	.	S	A	N	Q	R	K	G	R	C	G	R	V	S	E	G	I	C	I	R	L	Y	S	E	D	D	F	L	S	R	P	E	F	T	D	P	E	I	L	R	T	N	L	A	S	V	I
Query Conservation		.																									.	.
Alig confidence		.																									.	.
Template Conservation
Template Sequence		I	N	R	S	L	F	D	Y	Y	E	R	K	Y	G	K	G	W	E	Y	S	V	V	Y	P	T	A	I	K	I	R	Q	E	I	G	R	L	I	R	S	A	E	D	T	G	A	C	V	I	L	D	K	R	A	G	Q	F	R	K	F	I	P	D	M	K	K	T	S	D	P	A	S	D	I
Template Known Secondary structure													T	T	S							T																		S	S	S										T	T		G	G	G	G	T	T	S	T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions