Job Description P43329 Confidence 98.35% Date Thu Jan 5 12:02:17 GMT 2012 Rank 143 Aligned Residues 133 % Identity 28% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		Q	V	V	I	V	A	G	E	T	G	S	G	K	T	T	Q	L	P	K	I	C	M	E	L	.	G	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T	E	P	G	G	C	I	G	Y	K	V	R	F	S	D	H	V	S	D	N	T	M	V	K	L
Query Conservation																										.
Alig confidence																										.																																		.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.
Template Sequence		N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	.	.	.	.	.	.	.	.	.	Y	G	D	E	T	R	T	K	S	P	V	D	I
Template Known Secondary structure										S	S	S	S	T	T																							S				T	T	G	G	G	S	S							S	S				.	.	.	.	.	.	.	.	.				S	S	S			S	S	S	T	T
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.										.	160	.	.	.	.	.	.	.	.	.	170	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																																.															.	.
Query SS confidence																																																.															.	.
Query Sequence		M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	.	R	R	P	D	L	K	I	I	I	T	S	A	T	I	.	.	D	P	E	R	F	S	R	H	F	N	N	A
Query Conservation																																																.															.	.
Alig confidence							.	.	.	.	.	.	.	.															.																			.															.	.
Template Conservation							.	.	.	.	.	.	.	.															.
Template Sequence		V	K	E	G	M	.	.	.	.	.	.	.	.	E	K	F	K	K	A	D	V	L	I	I	D	T	A	.	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	Q	Q	A	G	I	Q	A	K	A	F	K	E	A
Template Known Secondary structure							.	.	.	.	.	.	.	.		T	T	S	S		S								.		S		S	S											T	T	S	S	S			S								G	G	G	G	G	G										T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.															.
Template SS confidence
		172	.	.	.	.									.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions