Job Description P43329 Confidence 99.94% Date Thu Jan 5 12:02:17 GMT 2012 Rank 24 Aligned Residues 304 % Identity 18% Template c2v1xB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent dna helicase q1; PDBTitle: crystal structure of human recq-like dna helicase Resolution 2.00 Å

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		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.																																																		.	.
Query SS confidence																													.	.																																																		.	.
Query Sequence		K	K	Q	D	I	L	E	A	I	R	D	H	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	T	.	.	Q	L	P	K	I	C	M	E	L	G	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T	E	P	G	G	C	I	G	Y	K	.	.
Query Conservation																													.	.																																																		.	.
Alig confidence																													.	.							.	.	.	.	.	.																								.														.	.
Template Conservation																																					.	.	.	.	.	.																								.
Template Sequence		L	Q	L	E	T	I	N	V	T	M	A	G	K	E	V	F	L	V	M	P	T	G	G	G	K	S	L	C	Y	Q	L	P	A	L	C	.	.	.	.	.	.	S	D	G	F	T	L	V	I	C	P	L	I	S	L	M	E	D	Q	L	M	V	L	K	.	Q	L	G	I	S	A	T	M	L	N	A	S	S	S	K
Template Known Secondary structure		T										T	T									T	T	S			T									S	.	.	.	.	.	.	S	S	S							S														.			T								S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.																								.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.							130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
								158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.							.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure		.	.	.	.	.	.																			.	.	.	.	.	.																													.										.	.
Query SS confidence		.	.	.	.	.	.																			.	.	.	.	.	.																													.										.	.
Query Sequence		.	.	.	.	.	.	V	R	F	S	D	H	V	S	D	N	T	M	V	K	L	M	T	D	.	.	.	.	.	.	G	I	L	L	A	E	I	Q	Q	D	R	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	E	R	S	.	L	N	I	D	F	L	L	G	Y	.	.	L	K	E	L	L	P	R	R	P	D
Query Conservation		.	.	.	.	.	.																			.	.	.	.	.	.																													.										.	.
Alig confidence		.	.	.	.	.	.																			.	.	.	.	.	.																													.										.	.
Template Conservation
Template Sequence		E	H	V	K	W	V	H	A	E	M	V	N	K	N	S	E	L	K	L	I	Y	V	T	P	E	K	I	A	K	S	K	M	F	M	S	R	L	E	K	A	Y	E	A	R	R	F	T	R	I	A	V	D	E	V	H	C	C	S	Q	W	G	H	D	F	R	P	D	Y	K	A	L	G	I	L	K	R	Q	F	P	N
Template Known Secondary structure														T	T										T					S														T	T									T	G	G	G	G	S	T	T	S	T	T			G	G	G	G	G	G								T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.																																																							.	.
Query SS confidence														.	.	.																																																							.	.
Query Sequence		L	K	I	I	I	T	S	A	T	I	D	P	.	.	.	E	R	F	S	R	H	F	N	N	A	P	I	I	E	V	S	G	R	T	Y	P	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	T	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S	Q	E	.	.	S	H	G	D	I	L	I	F	M
Query Conservation														.	.	.																																																							.	.
Alig confidence														.	.	.																											.	.	.	.	.	.																							.	.
Template Conservation																																											.	.	.	.	.	.
Template Sequence		A	S	L	I	G	L	T	A	T	A	T	N	H	V	L	T	D	A	Q	K	I	L	C	I	E	K	C	F	T	F	T	A	S	F	N	R	P	N	L	Y	Y	.	.	.	.	.	.	E	V	R	Q	K	P	S	N	T	E	D	F	I	E	D	I	V	K	L	I	N	G	R	Y	K	G	Q	S	G	I	I	Y	C
Template Known Secondary structure		S							S	S													T	T			S											T	T				.	.	.	.	.	.							S	S													T	T	T	T	T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.							.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		S	G	E	R	E	I	R	D	T	A	D	A	L	N	K	L	N	L	R	H	T	E	I	L	P	L	Y	A	R	L	S	N	S	E	Q	N	R	V	F	Q	.	.	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y	V	I	D	P	G	T	A	R	I	S	R	Y	S
Query Conservation																																										.	.
Alig confidence																		.	.	.																						.	.																																		.	.	.	.	.
Template Conservation																		.	.	.																																																									.	.	.	.	.
Template Sequence		F	S	Q	K	D	S	E	Q	V	T	V	S	L	Q	N	L	.	.	.	G	I	H	A	G	A	Y	H	A	N	L	E	P	E	D	K	T	T	V	H	R	K	W	S	A	N	E	I	Q	V	V	V	A	T	V	A	F	G	M	G	I	D	K	P	D	V	R	F	V	I	H	H	S	M	S	K	.	.	.	.	.
Template Known Secondary structure		S	S														T	.	.	.	T								T	T	S														T	T	S	S	S						T	T	S		T	T				T	T							S	S			S	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.																																																									.	.	.	.	.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.				.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		Y	R	T	K	V	Q	R	L	P	I	E	P	I	S	Q	A	S	A	N	Q	R	K	G	R	C	G	R	V	.	S	E	G	I	C	I	R	L	Y	S	E	D	D	F	L	S
Query Conservation																														.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	S	M	E	N	Y	Y	Q	E	S	G	R	A	G	R	D	D	M	K	A	D	C	I	L	Y	Y	G	F	G	D	I	F	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	S									T	T	S		T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions