Job Description P43329 Confidence 100.00% Date Thu Jan 5 12:02:17 GMT 2012 Rank 17 Aligned Residues 495 % Identity 20% Template c2p6uA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase Resolution 3.14 Å

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		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.
Predicted Secondary structure																																																																											.	.	.
Query SS confidence																																																																											.	.	.
Query Sequence		D	I	L	E	A	I	R	D	H	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	T	Q	L	P	K	I	C	M	E	L	G	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T	E	P	G	G	C	I	G	Y	K	.	.	.	V	R	F	S
Query Conservation																																																																											.	.	.
Alig confidence																										.																																							.	.									.	.	.
Template Conservation																										.																																							.	.
Template Sequence		E	A	V	E	K	V	F	S	G	K	N	L	L	L	A	M	P	T	A	A	G	K	T	L	.	L	A	E	M	A	M	V	R	E	A	I	K	G	G	K	S	L	Y	V	V	P	L	R	A	L	A	G	E	K	Y	E	S	F	K	K	W	E	K	.	.	I	G	L	R	I	G	I	S	T	G	D	Y	E	S	R
Template Known Secondary structure								T	T		S							S	S							.													T								S	S												G	G	G	G	T	.	.	T	T								S			S
Template Predicted Secondary structure																										.																																							.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.																					.	.
Query SS confidence																											.																					.	.
Query Sequence		D	H	V	S	D	N	T	M	V	K	L	M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	.	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	E	R	S	L	N	I	.	.	D	F	L	L	G	Y	L	K	E	L	L	P	R	R	P	D	L	K	I	I	I	T	S	A	T	I	D	P	E	R	F	S
Query Conservation																											.																					.	.
Alig confidence																											.																					.	.
Template Conservation
Template Sequence		D	E	H	L	G	D	C	D	I	I	V	T	T	S	E	K	A	D	S	L	I	R	N	R	A	S	W	I	K	A	V	S	C	L	V	V	D	E	I	H	L	L	D	S	E	K	R	G	A	T	L	E	I	L	V	T	K	M	R	R	M	N	K	A	L	R	V	I	G	L	S	A	T	A	P	N	V	T	E	I
Template Known Secondary structure			T	T	G	G	G		S															T	T		S	S	G	G	G							T	T	G	G	G	G	G		T	T	T																T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.								.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																										.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.
Query Sequence		R	H	F	N	N	A	P	I	I	E	V	S	G	R	T	Y	P	V	E	V	R	Y	R	P	.	.	.	.	.	.	.	I	V	E	E	A	D	D	T	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S	Q	E	S	H	G	D	I	L	I	F	M	S	G	E	R	E	I	R	D	T	A	D	A	L	N
Query Conservation																										.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.																							.	.	.	.	.
Template Conservation																																																							.	.	.	.	.
Template Sequence		A	E	W	L	D	A	D	Y	Y	V	S	D	W	R	P	V	P	L	V	E	G	V	L	C	E	G	T	L	E	L	F	D	G	A	F	S	T	S	R	R	V	K	F	E	E	L	V	E	E	C	V	A	E	.	.	.	.	.	N	G	G	V	L	V	F	E	S	T	R	R	G	A	E	K	T	A	V	K	L	S
Template Known Secondary structure						T										S	S									T	T							T	T						B														.	.	.	.	.	T	S							S	S
Template Predicted Secondary structure																																																							.	.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.						.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		312	.	.	.	.	.	.	.																												320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Query Sequence		K	L	N	L	R	H	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	P	L	Y	A	R	L	S	N	S	E	Q	N	R	V	F	Q	.	.	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.												.	.	.	.
Template Conservation																																																																				.	.	.	.
Template Sequence		A	I	T	A	K	Y	V	E	N	E	G	L	E	K	A	I	L	E	E	N	E	G	E	M	S	R	K	L	A	E	C	V	R	K	G	A	A	F	H	H	A	G	L	L	N	G	Q	R	R	V	V	E	D	A	F	R	R	G	N	I	K	V	V	V	A	T	.	.	.	.	P	T	L	V	N	L	P	A	R	R
Template Known Secondary structure						T	T												T	T			S												T	S						T	T	S															T	S								.	.	.	.	T	T							S
Template Predicted Secondary structure																																																																				.	.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.					330	.	.	.	.	.	.	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.				.	.	.	.	.	410	.	.	.	.	.	.					.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.													.	.	.	.													.	.	.	.	.	.	.
Query SS confidence																																												.	.	.													.	.	.	.													.	.	.	.	.	.	.
Query Sequence		V	I	D	P	G	T	A	R	I	S	R	Y	S	Y	R	T	K	V	Q	R	L	P	I	E	P	I	S	Q	A	S	A	N	Q	R	K	G	R	C	G	R	V	S	.	.	.	E	G	I	C	I	R	L	Y	S	E	D	D	.	.	.	.	F	L	S	R	P	E	F	T	D	P	E	I	.	.	.	.	.	.	.
Query Conservation																																												.	.	.													.	.	.	.													.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.													.	.	.	.													.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	V	R	S	L	Y	R	F	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	K	V	S	E	Y	K	Q	M	A	G	R	A	G	R	P	G	M	D	E	R	G	E	A	I	I	I	V	G	K	R	D	R	E	I	A	V	K	R	Y	I	F	G	E	P	E	R	I	T	S	K	L	G	V	E
Template Known Secondary structure							S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T				T	T	T		S	S									S	S		T						T	T	T	S										T	T	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.															.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
				429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.								.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																									.	.	.	.	.	.	.
Query SS confidence		.	.																									.	.	.	.	.	.	.
Query Sequence		.	.	L	R	T	N	L	A	S	V	I	L	Q	M	T	A	L	G	L	G	D	I	A	A	F	P	.	.	.	.	.	.	.	F	V	E	A	P	D	K	R	N	I	Q	D	G	V	R	L	L	E	E	L	G	A	I	T	T	D	E	Q	A	S	A	Y	K	L	T	P	L	G	R	Q	L	S	Q	L	P	V	D
Query Conservation		.	.																									.	.	.	.	.	.	.
Alig confidence		.	.																									.	.	.	.	.	.	.																													.	.	.
Template Conservation																																																															.	.	.
Template Sequence		T	H	L	R	F	H	S	L	S	I	I	C	D	G	Y	A	K	T	L	E	E	L	E	D	F	F	A	D	T	F	F	F	K	Q	N	E	I	S	L	S	Y	E	L	E	R	V	V	R	Q	L	E	N	W	G	M	V	V	E	A	A	H	.	.	.	L	A	P	T	K	L	G	S	L	V	S	R	L	Y	I	D
Template Known Secondary structure															T	S		S	S										T	S																								T	T	S				S	S	S	.	.	.														T
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.				.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.				.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.							.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure																	.	.	.																																		.	.	.	.	.	.
Query SS confidence																	.	.	.																																		.	.	.	.	.	.
Query Sequence		P	R	L	A	R	M	V	L	E	A	Q	K	H	G	C	.	.	.	V	R	E	A	M	I	I	T	S	A	L	S	I	Q	D	P	R	E	R	P	M	D	K	Q	Q	A	S	D	E	K	H	R	R	.	.	.	.	.	.	F	H	D	K	E	S	D	F	L	A	F	V	N	L	W	N	Y	L	G	E	Q	Q	K
Query Conservation																	.	.	.																																		.	.	.	.	.	.
Alig confidence																	.	.	.																																		.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	T	G	F	I	F	H	D	V	L	S	R	M	E	L	S	D	I	G	A	L	H	L	I	C	R	T	P	D	M	E	R	L	T	V	R	K	T	D	S	W	V	E	E	E	A	F	R	L	R	K	E	L	S	Y	Y	P	S	D	F	S	V	E	Y	D	W	F	L	S	E	V	K	T	A	L	C	L	K	D
Template Known Secondary structure																											T	T	S	T	T	S							T	T											T	T	T	T	S	S					T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
		571	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	S	S	N	A	F	R	R	L	C	R	T	D	Y	L	N	Y	L	R	V	R	E	W	Q	D	I	Y	T	Q	L	R	Q	V	V	K	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	I	E	E	K	D	E	D	E	I	C	A	K	Y	G	I	A	P	G	D	L	R	R	I	V	E	T	A	E	W	L	S	N	A	M	N	R	I
Template Known Secondary structure				T	T											T
Template Predicted Secondary structure
Template SS confidence
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.