Job Description P43329 Confidence 99.57% Date Thu Jan 5 12:02:17 GMT 2012 Rank 55 Aligned Residues 223 % Identity 21% Template c2j7pA_ PDB info PDB header:signal recognition Chain: A: PDB Molecule:signal recognition particle protein; PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy Resolution 1.97 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		E	Q	Q	K	L	T	F	T	A	L	Q	Q	R	L	D	S	L	M	L	R	D	R	L	R	F	S	R	R	L	H	G	V	.	K	K	V	K	N	P	D	A	Q	Q	A	I	F	Q	E	M	A	K	E	I	D	Q	A	A	G	K	V	L	L	R	E	A	A	R	P	E	I	T	Y	P	D	N	L	P	V	S	Q
Query Conservation																																		.
Alig confidence																																		.																										.	.	.	.	.
Template Conservation																																																												.	.	.	.	.
Template Sequence		Q	Q	L	S	A	R	L	Q	E	A	I	G	R	L	R	G	R	G	R	I	T	E	E	D	L	K	A	T	L	R	E	I	R	R	A	L	M	D	A	D	V	N	L	E	V	A	R	D	F	V	E	R	V	R	E	E	A	L	.	.	.	.	.	G	K	Q	V	L	E	S	L	T	P	A	E	V	I	L	A	T
Template Known Secondary structure														T	T	T	T	S		S																				T	T																			.	.	.	.	.		T	T	T	T	T		S
Template Predicted Secondary structure																																																												.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90										.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																														.
Query SS confidence											.	.	.	.	.	.	.	.	.																														.
Query Sequence		K	K	Q	D	I	L	E	A	I	.	.	.	.	.	.	.	.	.	R	D	H	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	T	Q	L	P	K	I	C	M	E	L	G	R	.	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T	E	P	G
Query Conservation											.	.	.	.	.	.	.	.	.																														.
Alig confidence											.	.	.	.	.	.	.	.	.																														.																													.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		V	Y	E	A	L	K	E	A	L	G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	.	.	.	.
Template Known Secondary structure										T	T	S	S								S	S								S	T	T	S	S														T	T	T											S	S	T	T													T	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		G	C	I	G	Y	K	V	R	F	S	D	H	V	S	D	N	T	M	V	K	L	M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	.	R	R	P	D	L	K	I	I	I	T	S	A
Query Conservation																																																																					.
Alig confidence		.	.	.	.	.	.												.	.	.	.	.	.																											.																		.
Template Conservation		.	.	.	.	.	.												.	.	.	.	.	.																											.
Template Sequence		.	.	.	.	.	.	V	P	V	L	E	V	M	D	G	E	S	.	.	.	.	.	.	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	.	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A
Template Known Secondary structure		.	.	.	.	.	.								T	T			.	.	.	.	.	.															T	T											.			T	T																		S								T
Template Predicted Secondary structure		.	.	.	.	.	.												.	.	.	.	.	.																											.
Template SS confidence
								154	.	.	.	.	.	160	.	.	.	.							.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		231	.							.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.
Query Sequence		T	I	.	.	.	.	.	.	D	P	E	R	F	S	R	H	F	N	N	A	P	I	I
Query Conservation				.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.
Template Conservation
Template Sequence		M	T	G	Q	E	A	L	S	V	A	R	A	F	D	E	K	V	G	V	T	G	L	V
Template Known Secondary structure		T			T	T												T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions