Job Description P43329 Confidence 99.09% Date Thu Jan 5 12:02:17 GMT 2012 Rank 89 Aligned Residues 139 % Identity 24% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		D	H	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	T	Q	L	P	K	I	C	M	E	L	G	.	.	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T	E	P	G	G	C	I	G	Y	K	V	R	F	S	D	H	V	S	D	N	T	M
Query Conservation																													.	.
Alig confidence																													.	.																														.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.
Template Sequence		P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	.	.	.	.	.	.	.	.	.	.	V	D	F	F	P	S	D	V	G	Q	K	P
Template Known Secondary structure		S	S								S	S	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S											T	T	.	.	.	.	.	.	.	.	.	.							S	S				T
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.											.	.	.	160	.	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.							.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																			.															.	.	.	.	.	.
Query SS confidence																																																			.															.	.	.	.	.	.
Query Sequence		V	K	L	M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	.	R	R	P	D	L	K	I	I	I	T	S	A	T	I	.	.	.	.	.	.	D	P	E	R	F	S	R	H	F	N
Query Conservation																																																			.															.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.										.																			.															.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.										.
Template Sequence		V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	.	.	.	.	.	.	Y	D	V	L	L	V	D	T	A	.	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P
Template Known Secondary structure		T													T	T	.	.	.	.	.	.		S								.				S	S																		S								T	T	T	G	G	G	G									T	T		S
Template Predicted Secondary structure																	.	.	.	.	.	.										.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.							.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		243	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	P	I	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	G	V	V
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions