Job Description P43329 Confidence 97.28% Date Thu Jan 5 12:02:17 GMT 2012 Rank 171 Aligned Residues 165 % Identity 24% Template c2ipcB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of the translocation atpase seca from thermus2 thermophilus reveals a parallel, head-to-head dimer Resolution 2.80 Å

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		224	.	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250						.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure											.	.																			.	.	.	.	.
Query SS confidence											.	.																			.	.	.	.	.
Query Sequence		K	I	I	I	T	S	A	T	I	.	.	D	P	E	R	F	S	R	H	F	N	N	A	P	I	I	E	V	S	.	.	.	.	.	G	R	T	Y	P	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	T	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S	Q	E	S	H	G	D	I	L	I	F
Query Conservation											.	.																			.	.	.	.	.
Alig confidence											.	.											.								.	.	.	.	.											.	.	.	.	.	.	.	.																								.
Template Conservation																							.																							.	.	.	.	.	.	.	.																								.
Template Sequence		K	R	A	G	M	T	G	T	A	K	T	E	E	K	E	F	Q	E	I	Y	G	.	M	D	V	V	V	V	P	T	N	R	P	V	I	R	K	D	F	P	D	V	V	Y	.	.	.	.	.	.	.	.	R	T	E	K	G	K	F	Y	A	V	V	E	E	I	A	E	K	Y	E	R	G	Q	P	.	V	L	V	G
Template Known Secondary structure								S	S		G	G	G										.									S	S													.	.	.	.	.	.	.	.	S	S																			T			.
Template Predicted Secondary structure																							.																							.	.	.	.	.	.	.	.																								.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.									.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.		.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	G	E	R	E	I	R	D	T	A	D	A	L	N	K	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	I	S	I	E	K	S	E	R	L	S	Q	M	L	K	E	P	R	L	Y	L	P	R	L	E	M	R	L	E	L	F	K	K	A	S	Q	K	Q	Q	G	P	E	W	E	R	L	R	K	L	L	E	R	P	A	Q	L	K	D	E	D	L	A	P	F	E	G	L	I	P	P	K	G	N	L	R	T	A	W	E	G
Template Known Secondary structure			S	S													S	S	T	T	S																T	T			S										T	S	S	S	T	T		S					S	G	G	G	G	G			S	S
Template Predicted Secondary structure
Template SS confidence
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
													315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	L	R	H	T	E	I	L	P	L	Y	A	R	L	S	N	S	E	Q	N	R	V	F	Q	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																										.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.
Template Sequence		L	K	R	A	V	H	T	L	A	V	L	R	Q	G	I	P	H	Q	V	L	N	A	K	H	H	A	R	E	A	E	I	V	A	Q	A	G	R	S	K	T	V	T	I	A	T	N	M	A	G	R	G	T	.	.	.	D	I	K	L	G	G	N	P	E	Y	L	A	A	A	L	L	E	K	E	G	F	D	R	Y	E
Template Known Secondary structure														T									S	S	S										T	T	T	S	T	T							S	S	T	T	T	T		.	.	.				S	S								T	T	T	T	S	S	S		S	T	T	T
Template Predicted Secondary structure																																																						.	.	.
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.				.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.
																																																		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	D	P	G	T	A	R	I	S	R	Y	S	Y	R	T	K	V	Q	R	L	P	I	.	E	P	I	S	Q	A	S	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	K	V	E	L	F	I	K	K	M	V	A	G	K	E	E	E	A	R	A	L	A	Q	E	L	G	I	R	E	E	L	L	E	R	I	R	E	I	R	E	E	C	K	Q	D	E	E	R	V	R	A	L	G	.	.	.	.	.	.	.	.	.	.	.	G	L	F	I	I	G	T	E	R	H	E	S	R	R	I	D
Template Known Secondary structure														T												T	T																								T	T	T		.	.	.	.	.	.	.	.	.	.	.							S	S			S	S
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		607	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.												660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	R	K	G	R	C	G	R	V	S	E	G	I	C	I	R	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	Q	L	R	G	R	A	G	R	Q	G	D	P	G	G	S	R	F	Y
Template Known Secondary structure							T	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		676	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions