Job Description P43329 Confidence 99.91% Date Thu Jan 5 12:02:17 GMT 2012 Rank 29 Aligned Residues 332 % Identity 18% Template c2eyqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor Resolution 3.20 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.																	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query Sequence		D	A	Q	Q	A	I	F	Q	E	M	A	K	E	I	D	Q	A	A	G	K	V	L	L	R	E	A	A	R	P	E	I	T	Y	P	D	N	L	P	V	S	Q	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	I	L	E	A	I	R	D	H	Q	.	.	V	V	I	V	A	G	E	T
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		S	R	A	R	Q	K	A	A	E	K	V	R	D	V	A	A	E	L	L	D	I	Y	A	Q	R	A	A	K	E	G	F	A	F	K	H	D	R	E	Q	Y	Q	L	F	C	D	S	F	P	F	E	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V
Template Known Secondary structure																												T	S																		T			S																			S	S	S
Template Predicted Secondary structure
Template SS confidence
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.											.	.	.	.	.	.	170	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.
Query Sequence		G	S	G	K	T	T	Q	L	P	K	I	C	M	E	L	G	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T	E	P	G	G	C	I	G	Y	K	V	R	F	S	D	H	.	.	.	.	.	.	.	.	.	.	V	S	D	N	T	M	V	K	L
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.
Alig confidence																	.																											.																			.	.	.	.	.	.	.	.	.	.
Template Conservation																	.																											.
Template Sequence		G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	.	V	D	N	H	K	Q	V	A	V	L	V	P	T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	.	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I
Template Known Secondary structure			T	T	T												.		T	T	T								S	S														.		S	T	T	T	T							S	T	T	S														T	T			S
Template Predicted Secondary structure																	.																											.
Template SS confidence
		631	.	.	.	.	.	.	.	.	640	.	.	.	.	.		.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.		.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	R	R	P	D	L	K	I	I	I	T	S	A	T	I	D	P	E	R	F	S	R	H	F	N	N	A	P	I	I	E	V	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence								.	.	.	.																										.	.	.	.	.	.																																					.	.	.
Template Conservation								.	.	.	.																										.	.	.	.	.	.
Template Sequence		G	T	H	K	L	L	.	.	.	.	Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	F	G	V	R	H	K	.	.	.	.	.	.	E	R	I	K	A	M	R	A	N	V	D	I	L	T	L	T	A	T	P	I	P	R	T	L	N	M	A	M	S	G	M	R	D	L	S	I	I	A	T
Template Known Secondary structure				T				.	.	.	.		S					S	S								S	G	G	G	S						.	.	.	.	.	.								T	T	S							S	S											T	T	T	S
Template Predicted Secondary structure								.	.	.	.																										.	.	.	.	.	.
Template SS confidence
		709	710	.	.	.	.					.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.							740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.
			250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	S	G	R	T	Y	P	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	T	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S	Q	E	S	H	G	D	I	L	I	F	M	S	G	E	R	E	I	R	D	T	A	D	A	L	N	K	L	N	L	R	H	T	E	I	L	P	L	Y	A	R	L	S
Query Conservation		.
Alig confidence		.												.	.	.	.	.	.																	.	.	.	.	.																											.
Template Conservation														.	.	.	.	.	.																	.	.	.	.	.																											.
Template Sequence		P	P	A	R	R	L	A	V	K	T	F	V	.	.	.	.	.	.	R	E	Y	D	S	M	V	V	R	E	A	I	L	R	E	I	.	.	.	.	.	L	R	G	G	Q	V	Y	Y	L	Y	N	D	V	E	N	I	Q	K	A	A	E	R	L	A	E	L	.	V	P	E	A	R	I	A	I	G	H	G	Q	M	R
Template Known Secondary structure					B		B							.	.	.	.	.	.																	.	.	.	.	.	T	T	T										S	S													.		T	T	S							S	S
Template Predicted Secondary structure														.	.	.	.	.	.																	.	.	.	.	.																											.
Template SS confidence
		779	780	.	.	.	.	.	.	.	.	.	790							.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.						.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.		.	.	.	.	.	.	.	840	.	.	.	.	.	.
		329	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.
Predicted Secondary structure											.	.																																																																				.
Query SS confidence											.	.																																																																				.
Query Sequence		N	S	E	Q	N	R	V	F	Q	.	.	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y	V	I	D	P	G	T	A	R	I	S	R	Y	S	Y	R	T	K	V	Q	R	L	P	I	E	P	I	S	Q	A	S	A	N	Q	R	K	G	R	C	G	R	V	S	.	E
Query Conservation											.	.																																																																				.
Alig confidence											.	.																												.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.																	.
Template Conservation																																								.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Template Sequence		E	R	E	L	E	R	V	M	N	D	F	H	H	Q	R	F	N	V	L	V	C	T	T	I	I	E	T	G	I	D	I	P	T	A	N	T	I	I	.	.	.	.	.	.	.	.	I	E	R	A	D	H	F	.	.	.	.	.	.	.	.	.	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	S	H	H	Q
Template Known Secondary structure														T	T	S							S	S	T	T	G	G	G	S			T	T						.	.	.	.	.	.	.	.		T	T	T	T	S	S	.	.	.	.	.	.	.	.	.										T	T			B	T	T	B
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Template SS confidence
		847	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.									.	.	.	.	.	890	.										.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.
		406	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	C	I	R	L	Y	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Y	A	W	L	L	T	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		910	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions