Job Description P43329 Confidence 99.91% Date Thu Jan 5 12:02:17 GMT 2012 Rank 30 Aligned Residues 323 % Identity 20% Template c2db3D_ PDB info PDB header:hydrolase/rna Chain: D: PDB Molecule:atp-dependent rna helicase vasa; PDBTitle: structural basis for rna unwinding by the dead-box protein2 drosophila vasa Resolution 2.20 Å

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		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.						.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																															.	.								.	.	.	.	.
Query SS confidence																															.	.								.	.	.	.	.
Query Sequence		S	Q	K	K	Q	D	I	L	E	A	I	R	D	H	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	T	.	.	Q	L	P	K	I	C	M	.	.	.	.	.	E	L	G	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T	E	P	G	G
Query Conservation																															.	.								.	.	.	.	.
Alig confidence																															.	.								.	.	.	.	.																														.
Template Conservation																																																																										.
Template Sequence		T	P	I	Q	K	C	S	I	P	V	I	S	S	G	R	D	L	M	A	C	A	Q	T	G	S	G	K	T	A	A	F	L	L	P	I	L	S	K	L	L	E	D	P	H	E	L	E	L	G	R	P	Q	V	V	I	V	S	P	T	R	E	L	A	I	Q	I	F	N	E	A	R	K	.	F	A	F	E	S	Y	L
Template Known Secondary structure														T	T									T	T	S																	S					B	T	T	B		S						S	S														.		T	T	T	S	S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.							.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.																					.																																	.
Query SS confidence																.	.	.	.	.	.																					.																																	.
Query Sequence		C	I	G	Y	K	V	R	F	S	D	H	V	S	D	.	.	.	.	.	.	N	T	M	V	K	L	M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	.	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	.	R	R	P	D	L	K
Query Conservation																.	.	.	.	.	.																					.																																	.
Alig confidence																.	.	.	.	.	.																					.																																	.
Template Conservation
Template Sequence		K	I	G	I	V	Y	G	G	T	S	F	R	H	Q	N	E	C	I	T	R	G	C	H	V	V	I	A	T	P	G	R	L	L	D	F	V	D	R	T	F	I	T	F	E	D	T	R	F	V	V	L	D	E	A	D	R	M	L	D	M	G	F	S	E	D	M	R	R	I	M	T	H	V	T	M	R	P	E	H	Q
Template Known Secondary structure								S	S	S											T			S																T	S	S			T	T								T					T	S												T		T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		225	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		I	I	I	T	S	A	T	I	.	.	D	P	E	R	F	S	R	H	F	N	N	A	P	I	I	E	V	S	G	R	T	Y	P	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	T	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S	Q	E	S	H	G	D	I	L	I	F	M	S	G	E	R	E
Query Conservation										.	.
Alig confidence										.	.																													.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.
Template Sequence		T	L	M	F	S	A	T	F	P	E	E	I	Q	R	M	A	G	E	F	L	K	N	Y	V	F	V	A	I	G	I	V	G	G	A	C	S	D	V	.	.	.	.	.	.	K	Q	T	I	Y	E	V	N	K	Y	A	K	R	S	K	L	I	E	I	L	S	E	Q	A	D	G	T	I	V	F	V	E	T	K	R	G
Template Known Secondary structure							S											G	G	G		S	S							S	S	T	T				T	T		.	.	.	.	.	.									G	G	G														T	T						S
Template Predicted Secondary structure																																								.	.	.	.	.	.
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.							.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		I	R	D	T	A	D	A	L	N	K	L	N	L	R	H	T	E	I	L	P	L	Y	A	R	L	S	N	S	E	Q	N	R	V	F	Q	.	.	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y	V	I	D	P	G	T	A	R	I	S	R	Y	S	Y	R	T	K	V
Query Conservation																																					.	.
Alig confidence													.	.	.																						.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	F	L	A	S	F	L	S	E	K	.	.	.	E	F	P	T	T	S	I	H	G	D	R	L	Q	S	Q	R	E	Q	A	L	R	D	F	K	N	G	S	M	K	V	L	I	A	T	S	V	A	S	R	G	L	D	I	K	N	I	K	H	V	I	N	Y	D	M	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T	.	.	.	T								T	T	S														T	T	S								G	G	G	S	S	S				T	T							S	S		.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		502	.	.	.	.	.	.	.	510	.	.				.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.											.	.	.	.	.	.	.	430
Predicted Secondary structure																									.																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.																				.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	R	L	P	I	E	P	I	S	Q	A	S	A	N	Q	R	K	G	R	C	G	R	V	.	S	E	G	I	C	I	R	L	Y	S	E	D	D	F	L	S	R	P	E	.	.	.	.	.	.	.	.	.	.	F	T	D	P	E	I	L	R
Query Conservation																									.																				.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																		.																				.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	P	S	K	I	D	D	Y	V	H	R	I	G	R	T	G	R	V	G	N	N	G	R	A	T	S	F	F	D	P	E	K	D	R	A	I	A	A	D	L	V	K	I	L	E	G	S	G	Q	T	V	P	D	F	L	R
Template Known Secondary structure		.	.	.	.	.	.		S	S									T	T	S	S		T	T											T	T	T															T	T					G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions