Job Description P43329 Confidence 100.00% Date Thu Jan 5 12:02:17 GMT 2012 Rank 7 Aligned Residues 426 % Identity 16% Template c1ymfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:genome polyprotein [contains: flavivirin PDBTitle: crystal structure of yellow fever virus ns3 helicase2 complexed with adp Resolution 2.60 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		A	I	R	D	H	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	T	Q	L	P	K	I	C	M	E	L	G	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T	E	P	G	G	C	I	G	Y	K	V	R	.	F	S	D	H	V	S	D	N
Query Conservation																																																																									.
Alig confidence																																																									.	.	.	.	.	.	.										.
Template Conservation																																																									.	.	.	.	.	.	.
Template Sequence		X	L	K	K	G	X	T	T	V	L	D	F	H	P	G	A	G	K	T	R	R	F	L	P	Q	I	L	A	E	C	A	R	R	R	L	R	T	L	V	L	A	P	T	R	V	V	L	S	E	X	K	E	A	F	H	.	.	.	.	.	.	.	G	L	D	V	K	F	H	T	Q	A	F	S	A	H	G	S	G	R
Template Known Secondary structure		T	T	S	T	T									T	T	S		T	T	T	T													T								S	S												T	.	.	.	.	.	.	.	T	S						S	S								S	S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.								.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	M	V	K	L	M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	R	R	P	D	L	K	I	I	I	T	S	A	T	I	D	P	E	R	F	S	R	H	F	N	N	A	P	I	I
Query Conservation
Alig confidence																																																				.																.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.																.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	I	D	A	X	C	H	A	T	L	T	Y	R	X	L	E	P	T	R	V	V	N	W	E	V	I	I	X	D	E	A	H	F	L	D	P	A	S	I	A	A	R	G	W	A	A	H	R	A	.	R	A	N	E	S	A	T	I	L	X	T	A	T	P	P	.	.	.	.	.	.	.	.	.	.	G	T	S	D
Template Known Secondary structure																		S	S							S					T	T	T	T			S															.		T	T	S								S	S		T	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																				.																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.											.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	S	G	R	T	Y	P	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	T	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S	Q	E	S	H	G	D	I	L	I	F	M	S	G	E	R	E	I	R	D	T	A	D	A	L	N	K	L	N	L	R	H	T	E	I	L	P	L	Y	A	R	L
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Sequence		E	F	P	H	S	N	G	E	I	E	D	V	Q	T	D	I	P	S	E	P	W	N	T	G	H	D	W	I	L	A	.	.	.	.	.	.	.	.	.	.	.	D	K	R	P	T	A	W	F	L	P	S	I	R	A	A	N	V	X	A	A	S	L	R	K	.	.	.	A	G	K	S	V	V	V	L	N	R	K	T
Template Known Secondary structure		S	S				S	S											S	S			S	S	S		T					.	.	.	.	.	.	.	.	.	.	.			S							S															.	.	.	T	T								S	S	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.												.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.				.	.	.	.	.	.	.	390	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.		.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.
Predicted Secondary structure																																										.																																						.
Query SS confidence																																										.																																						.
Query Sequence		S	N	S	E	Q	N	R	V	F	Q	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y	V	I	D	P	G	.	T	A	R	I	S	R	Y	S	Y	R	T	K	V	Q	R	L	P	I	E	P	I	S	Q	A	S	A	N	Q	R	K	G	R	C	G	R	V	S	.	E
Query Conservation																																										.																																						.
Alig confidence			.	.	.	.	.	.	.	.	.	.																				.										.																																						.
Template Conservation			.	.	.	.	.	.	.	.	.	.																				.
Template Sequence		F	.	.	.	.	.	.	.	.	.	.	E	K	K	P	D	F	I	L	A	T	D	I	A	E	X	G	A	N	L	.	C	V	E	R	V	L	D	C	R	T	A	F	K	P	V	L	V	D	E	G	R	K	V	A	I	K	G	P	L	R	I	S	A	S	S	A	A	Q	R	R	G	R	I	G	R	N	P	N	R
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.					S					S	S	G	G	G			T	T		.			S															T	T	T	T																				T	T	S	S			T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
		395											.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	C	I	R	L	Y	S	E	D	D	F	L	S	R	P	E	F	T	D	P	E	I	L	R	T	N	L	A	S	V	I	L	Q	M	T	A	L	G	L	G	D	I	A	A	F	P	F	V	E	A	P	D	K	R	N	I	Q	D	G	V	R	L	L	E	E	L	G	A	I	T	T	D	E	Q	A	S	A	Y	K
Query Conservation
Alig confidence																																																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		D	G	D	S	Y	Y	Y	S	E	P	T	S	E	N	N	A	H	H	V	C	W	L	E	A	S	X	L	L	D	N	X	E	V	R	G	G	X	V	A	P	L	Y	G	V	E	G	T	K	T	P	V	S	P	G	E	X	R	L	R	D	D	Q	R	K	V	F	R	E	L	V	R	N	C	D	L	.	.	.	.	.
Template Known Secondary structure										S							T	T	B											T	T	S			G	G	G						S	T	T						S	S		T	T	T	T																T	T			.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	P	L	G	R	Q	L	S	Q	L	P	V	D	P	R	L	A	R	M	V	L	E	A	Q	K	H	G	C	V	R	E	A	M	I	I	T	S	A	L	S	I	Q	D	P	R	E	R	P	M	D	K	Q	Q	A	S	D	E	K	H	R	R	F	H	D	K	E	S	D	F	L	A	F	V	N	L	W	N	Y	L
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.
Template Sequence		P	V	W	L	S	W	Q	V	A	K	A	G	L	K	T	N	D	R	K	W	.	.	.	.	.	.	.	.	C	F	E	G	P	E	E	H	E	I	L	N	D	S	G	E	T	V	K	C	R	A	P	G	G	A	K	K	P	L	R	P	R	W	C	D	E	R	V	S	S	D	Q	S	A	L	S	E	F	I	K	F
Template Known Secondary structure											T	T	T			T	T			G	G	.	.	.	.	.	.	.	.	G	T	S			G	G	G			B		T	T	S		B						T	T	S								S	S			G	G	G	G	S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.
Template SS confidence
		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.									.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.
		566	.	.	.	570
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	Q	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	G	R	R
Template Known Secondary structure			T	T	T
Template Predicted Secondary structure
Template SS confidence
		619	620	.	.	.