Job Description P43329 Confidence 99.84% Date Thu Jan 5 12:02:17 GMT 2012 Rank 38 Aligned Residues 311 % Identity 18% Template c1s2mA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:putative atp-dependent rna helicase dhh1; PDBTitle: crystal structure of the dead box protein dhh1p Resolution 2.10 Å

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		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		S	Q	K	K	Q	D	I	L	E	A	I	R	D	H	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	T	.	.	Q	L	P	K	I	C	M	E	L	G	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T	E	P	G	G	C	I	G	Y	K
Query Conservation																															.	.
Alig confidence																															.	.																																					.
Template Conservation																																																																					.
Template Sequence		S	P	I	Q	E	E	A	I	P	V	A	I	T	G	R	D	I	L	A	R	A	K	N	G	T	G	K	T	A	A	F	V	I	P	T	L	E	K	V	K	P	K	L	N	K	I	Q	A	L	I	M	V	P	T	R	E	L	A	L	Q	T	S	Q	V	V	R	T	.	L	G	K	H	C	G	I	S	C	M	V	T
Template Known Secondary structure															T									T	T	S																T	T	S		S								S	S														.		T	T	T	T	T
Template Predicted Secondary structure																																																																					.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.							.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure									.	.	.	.	.	.																							.
Query SS confidence									.	.	.	.	.	.																							.
Query Sequence		V	R	F	S	D	H	V	.	.	.	.	.	.	S	D	N	T	M	V	K	L	M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	.	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	R	R	P	D	L	K	I	I	I	T	S	A
Query Conservation									.	.	.	.	.	.																							.
Alig confidence									.	.	.	.	.	.																							.															.
Template Conservation																																																				.
Template Sequence		T	G	G	T	N	L	R	D	D	I	L	R	L	N	E	T	V	H	I	L	V	G	T	P	G	R	V	L	D	L	A	S	R	K	V	A	D	L	S	D	C	S	L	F	I	M	D	E	A	D	.	K	M	L	S	R	D	F	K	T	I	I	E	Q	I	L	S	F	L	P	P	T	H	Q	S	L	L	F	S	A
Template Known Secondary structure			S	S	S									T	T	S			S															T	T		S			T	T								S			.			S	S												T	T	S		S	S								S
Template Predicted Secondary structure																																																				.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		231	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		T	I	D	P	.	.	.	E	R	F	S	R	H	F	N	N	A	P	I	I	E	V	S	G	R	T	Y	P	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	T	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S	Q	E	S	H	G	D	I	L	I	F	M	S	G	E	R	E	I	R	D	T	A
Query Conservation						.	.	.
Alig confidence						.	.	.																											.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.
Template Sequence		T	F	P	L	T	V	K	E	F	M	V	K	H	L	H	K	P	Y	E	I	N	L	M	E	E	L	T	L	K	G	I	T	Q	.	.	.	.	.	.	.	Y	Y	A	F	V	E	E	R	Q	K	L	H	C	L	N	T	L	F	S	K	L	Q	I	N	Q	A	I	I	F	C	N	S	T	N	R	V	E	L	L	A
Template Known Secondary structure																S	S					S			S	S		B		T	T				.	.	.	.	.	.	.							G	G	G												S			S							S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260								.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		D	A	L	N	K	L	N	L	R	H	T	E	I	L	P	L	Y	A	R	L	S	N	S	E	Q	N	R	V	F	Q	.	.	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y	V	I	D	P	G	T	A	R	I	S	R	Y	S	Y	R	T	K	V	Q	R	L	P	I
Query Conservation																																.	.
Alig confidence								.	.	.																						.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	I	T	D	L	.	.	.	G	Y	S	C	Y	Y	S	H	A	R	M	K	Q	Q	E	R	N	K	V	F	H	E	F	R	Q	G	K	V	R	T	L	V	C	S	D	L	L	T	R	G	I	D	I	Q	A	V	N	V	V	I	N	F	D	F	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								.	.	.	T								T	T	S														T	T	S	S	S					S	S		S	S	S	S				T	T							S	S			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		301	.	.	.	.	.				.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		E	P	I	S	Q	A	S	A	N	Q	R	K	G	R	C	G	R	V	.	S	E	G	I	C	I	R	L	Y	S	E	D	D	F	L	S	R
Query Conservation																				.
Alig confidence		.	.	.																.
Template Conservation		.	.	.
Template Sequence		.	.	.	T	A	E	T	Y	L	H	R	I	G	R	S	G	R	F	G	H	L	G	L	A	I	N	L	I	N	W	N	D	R	F	N	L
Template Known Secondary structure		.	.	.	S										B	S	S		T	T											G	G	G
Template Predicted Secondary structure		.	.	.
Template SS confidence
					363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions