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Job DescriptionP43329
Confidence99.85%DateThu Jan 5 12:02:17 GMT 2012
Rank36Aligned Residues305
% Identity22%Templatec1hv8B_
PDB info PDB header:rna binding proteinChain: B: PDB Molecule:putative atp-dependent rna helicase mj0669; PDBTitle: crystal structure of a dead box protein from the2 hyperthermophile methanococcus jannaschii
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   83......90.........100........ .110.........120.........130.........140.........150.........160
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Query Sequence  KQDILEAIRDHQVVIVAGETGSGKTT. . QLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRF
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Template Sequence  XKVIPLFLNDEYNIVAQARTGSGKTASFAIP. LIELVNENNGIEAIILTPTRELAIQVADEIES. LKGNKNLKIAKIYGG
Template Known Secondary structure  T
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SSSS.S
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   34.....40.........50.........60.... .....70.........80.........90...... ...100.........110.
 
   161..... ...170.........180.........190.........200.........210.........220.........230....
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Query Sequence  SDHVSD. . . . . NTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDP.
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Template Sequence  KAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKRILLFSATXPRE
Template Known Secondary structure  S
T
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TTTTTTS
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   112.......120.........130.........140.........150.........160.........170.........180.........190.
 
   235....240.........250.........260.........270.........280.........290.........300.........310...
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Query Sequence  . ERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGEREIRDTADALNKL
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Template Sequence  ILNLAKKYXGDYSFIKAKINANIEQSYVEVNENER. . . . . . . . . . FEALCRLLKNKEFYGLVFCKTKRDTKELASXLRDI
Template Known Secondary structure 

S

STTTS
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   192.......200.........210.........220...... ...230.........240.........250.........260.
 
   314.....320.........330....... ..340.........350.........360.........370.........380.........390.
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Query Sequence  NLRHTEILPLYARLSNSEQNRVFQ. . SHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQA
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Template Sequence  . . . GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVXSRGIDVNDLNCVINYHLPQ. . . . . . . . . . . . . . . . . . NPE
Template Known Secondary structure  ...T


SSS
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   262.......270.........280.........290.........300.........310....... ..320
 
   392.......400... ......410.........420
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Query Sequence  SANQRKGRCGRV. SEGICIRLYSEDDFLSR
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Template Sequence  SYXHRIGRTGRAGKKGKAISIINRREYKKL
Template Known Secondary structure  STTT

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   321........330.........340.........350
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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