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Job DescriptionP43329
Confidence100.00%DateThu Jan 5 12:02:17 GMT 2012
Rank3Aligned Residues415
% Identity18%Templatec1a1vA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   91........100.........110.........120.........130.........140.........150.........160.........170
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Query Sequence  RDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMV
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Template Sequence  QSFQVAHLHAPTGSGKSTKVPAAYAAQG. . . . YKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITTG. . . . . SPI
Template Known Secondary structure  SS


TTS
TTTTTT....

S
S



SS



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S
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   195....200.........210.........220.. .......230.........240.........250.........260.. ...
 
   171........180.........190.........200.........210.........220.........230.........240.........250
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Query Sequence  KLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVS
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Template Sequence  TYSTYGKFLA. . . DGGSGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATPP. . . . GSVTVPHPNIEEV
Template Known Secondary structure  ...TT





STTT

STTTTT
SSS
T....T





TT
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   266...270..... ....280.........290.........300.........310.........320..... ....330........
 
   251........260.........270.........280.........290.........300.........310.........320.........330
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Query Sequence  GRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNS
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Template Sequence  ALSTTGEIPFYGKAIPLEVIK. . . . . . . . . . . . . . . . . . GGRHLIFCHSKKKCDELAAKLVAL. . . GINAVAYYRGLDVS
Template Known Secondary structure 

S
SSTT
T..................SS
SST...T


TTS
GG
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   340.........350.........360 .........370.........380.... .....390........
 
   331........340.........350.........360.........370... ......380.........390.........400........
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Query Sequence  EQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISR. . YSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC
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Template Sequence  VI. . . . . PTSGDVVVVATDALFTG. . . . DFDSVIDCNTVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIY
Template Known Secondary structure  GS.....
SSSS
TT



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BS






SSS




BTTB
SSS
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   399400 .........410....... ..420.........430.........440.........450.........460.........
 
   409410......... 420.........430.........440.........450.........460.........470.........480.......
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Query Sequence  IRLYSEDDFLS. RPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLT
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Template Sequence  RFVAPGERPSGMFDSSVLCECYDAGAWYELTPAETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLTHIDAHF. . . . . . LS
Template Known Secondary structure  S
S

B
S
B




S


STTS
B





S

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   474.....480.........490.........500.........510.........520.........530.........540..... ..
 
   488.490.........500.........510.........520........ .530.........540.........550.......
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Query Sequence  PLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ. . DPRERPMDKQQASDEKHRRFHDKESDFLA
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Template Sequence  QTKQSGENFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIM
Template Known Secondary structure  TT
SST


S

SGGGGGGTTTGGG

S


SBSS


S


S
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   549550.........560.........570.........580.........590.........600.........610.........620
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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