Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	Q	L	V	Y	F	S	S	S	S	E	N	T	Q	R	F	I	E	R	L	G	L	P	A	V	R	I	P	L	N	E	R	E	R	I	Q	V	D	E	P	Y	I	L	I	V	P	S	Y	G	G	G	G	T	A	G	A	V	P	R
Secondary structure
SS confidence
Disorder		?	?	?																													?	?	?																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	V	I	R	F	L	N	D	E	H	N	R	A	L	L	R	G	V	I	A	S	G	N	R	N	F	G	E	A	Y	G	R	A	G	D	V	I	A	R	K	C	G	V	P	W	L	Y	R	F	E	L	M	G	T	Q	S	D	I	E	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Sequence		V	R	K	G	V	T	E	F	W	Q	R	Q	P	Q	N	A
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3n39 chain D Region: 3 - 130 Aligned: 128 Modelled: 128 Confidence: 100.0% Identity: 100% PDB header:oxidoreductase Chain: D: PDB Molecule:protein nrdi; PDBTitle: ribonucleotide reductase dimanganese(ii)-nrdf from escherichia coli in2 complex with nrdi Phyre2 PDB 1rlj chain A Region: 2 - 134 Aligned: 124 Modelled: 133 Confidence: 100.0% Identity: 33% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavoprotein NrdI Phyre2 PDB 2x2o chain A Region: 3 - 128 Aligned: 116 Modelled: 126 Confidence: 100.0% Identity: 48% PDB header:flavoprotein Chain: A: PDB Molecule:nrdi protein; PDBTitle: the flavoprotein nrdi from bacillus cereus with the2 initially oxidized fmn cofactor in an intermediate3 radiation reduced state Phyre2 PDB 1tll chain A Region: 2 - 131 Aligned: 129 Modelled: 130 Confidence: 99.9% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase, brain; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution. Phyre2 PDB 1tll chain A domain 2 Region: 1 - 131 Aligned: 129 Modelled: 131 Confidence: 99.9% Identity: 12% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 3hr4 chain C Region: 2 - 131 Aligned: 128 Modelled: 130 Confidence: 99.9% Identity: 10% PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex Phyre2 PDB 2bpo chain A Region: 2 - 131 Aligned: 128 Modelled: 130 Confidence: 99.9% Identity: 13% PDB header:reductase Chain: A: PDB Molecule:nadph-cytochrom p450 reductase; PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a. Phyre2 PDB 1j9z chain B Region: 2 - 131 Aligned: 128 Modelled: 130 Confidence: 99.9% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g Phyre2 PDB 1b1c chain A Region: 1 - 131 Aligned: 129 Modelled: 131 Confidence: 99.9% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 1bvy chain F Region: 2 - 131 Aligned: 129 Modelled: 130 Confidence: 99.9% Identity: 17% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1bvy chain F Region: 2 - 131 Aligned: 129 Modelled: 130 Confidence: 99.9% Identity: 17% PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) Phyre2 PDB 1ja1 chain A domain 2 Region: 1 - 131 Aligned: 130 Modelled: 129 Confidence: 99.9% Identity: 15% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 1ykg chain A domain 1 Region: 3 - 136 Aligned: 132 Modelled: 134 Confidence: 99.9% Identity: 14% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 1yob chain A domain 1 Region: 2 - 131 Aligned: 130 Modelled: 130 Confidence: 99.9% Identity: 17% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 2fcr chain A Region: 2 - 131 Aligned: 130 Modelled: 130 Confidence: 99.9% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 2wc1 chain A Region: 1 - 131 Aligned: 131 Modelled: 131 Confidence: 99.9% Identity: 14% PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a Phyre2 PDB 2hnb chain A Region: 1 - 131 Aligned: 130 Modelled: 131 Confidence: 99.8% Identity: 12% PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin Phyre2 PDB 1obo chain A Region: 2 - 131 Aligned: 129 Modelled: 130 Confidence: 99.8% Identity: 15% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1czn chain A Region: 2 - 131 Aligned: 129 Modelled: 130 Confidence: 99.8% Identity: 10% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1ag9 chain A Region: 4 - 131 Aligned: 127 Modelled: 128 Confidence: 99.8% Identity: 20% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 1 c3n39D_ 2 d1rlja_ 3 c2x2oA_ 4 c1tllA_ 5 d1tlla2 6 c3hr4C_ 7 c2bpoA_ 8 c1j9zB_ 9 d1b1ca_ 10 d1bvyf_ 11 c1bvyF_ 12 d1ja1a2 13 d1ykga1 14 d1yoba1 15 d2fcra_ 16 c2wc1A_ 17 c2hnbA_ 18 d1oboa_ 19 d1czna_ 20 d1ag9a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3n39D_ 100.0 100 PDB header:oxidoreductase Chain: D: PDB Molecule:protein nrdi; PDBTitle: ribonucleotide reductase dimanganese(ii)-nrdf from escherichia coli in2 complex with nrdi 2 d1rlja_ 100.0 33 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavoprotein NrdI 3 c2x2oA_ 100.0 48 PDB header:flavoprotein Chain: A: PDB Molecule:nrdi protein; PDBTitle: the flavoprotein nrdi from bacillus cereus with the2 initially oxidized fmn cofactor in an intermediate3 radiation reduced state 4 c1tllA_ 99.9 11 PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase, brain; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution. 5 d1tlla2 99.9 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 6 c3hr4C_ 99.9 10 PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex 7 c2bpoA_ 99.9 13 PDB header:reductase Chain: A: PDB Molecule:nadph-cytochrom p450 reductase; PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a. 8 c1j9zB_ 99.9 16 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g 9 d1b1ca_ 99.9 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 10 d1bvyf_ 99.9 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 11 c1bvyF_ 99.9 17 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) 12 d1ja1a2 99.9 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 13 d1ykga1 99.9 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 14 d1yoba1 99.9 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 15 d2fcra_ 99.9 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 16 c2wc1A_ 99.9 14 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a 17 c2hnbA_ 99.8 12 PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin 18 d1oboa_ 99.8 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 19 d1czna_ 99.8 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 20 d1ag9a_ 99.8 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 21 d1f4pa_ not modelled 99.8 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 22 c3f6sI_ not modelled 99.8 14 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 23 d1fuea_ not modelled 99.8 22 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 24 d2fz5a1 not modelled 99.5 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 25 d5nula_ not modelled 99.4 9 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 26 d1vmea1 not modelled 99.4 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 27 c1vmeB_ not modelled 99.4 15 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 28 c3hlyA_ not modelled 99.3 11 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 29 d1e5da1 not modelled 99.3 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 30 c3klbA_ not modelled 99.3 19 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 31 d1ycga1 not modelled 99.3 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 32 c3fniA_ not modelled 99.2 14 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 33 c1ychD_ not modelled 99.1 11 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 34 d2arka1 not modelled 99.1 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 35 c3edoA_ not modelled 99.0 15 PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution 36 c2ohiB_ not modelled 99.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 37 c2q9uB_ not modelled 99.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 38 c1e5dA_ not modelled 98.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 39 c3d7nA_ not modelled 98.9 16 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens 40 d2a5la1 not modelled 98.8 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 41 c3b6iB_ not modelled 98.6 18 PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure 42 d1ydga_ not modelled 98.6 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 43 c2zkiH_ not modelled 98.4 16 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 44 d1rtta_ not modelled 97.4 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 45 d1rlia_ not modelled 97.4 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein YwqN 46 d1t0ia_ not modelled 97.3 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 47 c3lcmB_ not modelled 97.3 16 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 48 d1t5ba_ not modelled 96.4 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 49 d1nni1_ not modelled 96.3 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 50 c3k1yE_ not modelled 96.2 13 PDB header:oxidoreductase Chain: E: PDB Molecule:oxidoreductase; PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d 51 c2q62A_ not modelled 96.0 13 PDB header:flavoprotein Chain: A: PDB Molecule:arsh; PDBTitle: crystal structure of arsh from sinorhizobium meliloti 52 c2hpvA_ not modelled 95.4 17 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase; PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis 53 c2fzvC_ not modelled 94.1 13 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative arsenical resistance protein; PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri 54 c2vzhA_ not modelled 93.9 20 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-dependent fmn reductase; PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex 55 c3f2vA_ not modelled 93.5 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58. 56 d2fzva1 not modelled 92.8 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 57 d1sqsa_ not modelled 92.4 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951 58 c3fvwA_ not modelled 91.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99. 59 d2z98a1 not modelled 90.9 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 60 c3rpeA_ not modelled 88.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92. 61 c3p0rA_ not modelled 86.1 13 PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne 62 c2amjD_ not modelled 79.1 20 PDB header:oxidoreductase Chain: D: PDB Molecule:modulator of drug activity b; PDBTitle: crystal structure of modulator of drug activity b from escherichia2 coli o157:h7 63 d2c42a3 not modelled 77.2 16 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Pyruvate-ferredoxin oxidoreductase, PFOR, domain II 64 c2v9cA_ not modelled 74.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1; PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red. 65 d2qwxa1 not modelled 70.9 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 66 d1z0sa1 not modelled 67.7 16 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 67 c1z0zC_ not modelled 67.1 16 PDB header:transferase Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase; PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad 68 c3czcA_ not modelled 60.8 4 PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans 69 d1ik6a2 not modelled 45.6 16 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 70 d1qrda_ not modelled 44.6 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 71 d2a9va1 not modelled 42.6 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 72 c2ct6A_ not modelled 35.5 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sh3 domain-binding glutamic acid-rich-like PDBTitle: solution structure of the sh3 domain-binding glutamic acid-2 rich-like protein 2 73 d1dxqa_ not modelled 34.7 21 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 74 d1f46a_ not modelled 29.6 15 Fold:TBP-like Superfamily:Cell-division protein ZipA, C-terminal domain Family:Cell-division protein ZipA, C-terminal domain 75 c3ha2B_ not modelled 28.8 14 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-quinone reductase; PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a 76 c2iz6A_ not modelled 25.5 17 PDB header:metal transport Chain: A: PDB Molecule:molybdenum cofactor carrier protein; PDBTitle: structure of the chlamydomonas rheinhardtii moco carrier2 protein 77 c1tvmA_ not modelled 24.4 9 PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system 78 c1vjqB_ not modelled 23.7 19 PDB header:structural genomics, de novo protein Chain: B: PDB Molecule:designed protein; PDBTitle: designed protein based on backbone conformation of2 procarboxypeptidase-a (1aye) with sidechains chosen for maximal3 predicted stability. 79 c3ju3A_ not modelled 18.5 18 PDB header:oxidoreductase Chain: A: PDB Molecule:probable 2-oxoacid ferredoxin oxidoreductase, alpha chain; PDBTitle: crystal structure of alpha chain of probable 2-oxoacid ferredoxin2 oxidoreductase from thermoplasma acidophilum 80 d1iowa1 not modelled 17.7 11 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 81 c1u6tA_ not modelled 16.4 46 PDB header:protein binding, signaling protein Chain: A: PDB Molecule:sh3 domain-binding glutamic acid-rich-like PDBTitle: crystal structure of the human sh3 binding glutamic-rich2 protein like 82 c2kglA_ not modelled 16.0 14 PDB header:chaperone Chain: A: PDB Molecule:mesoderm development candidate 2; PDBTitle: nmr solution structure of mesd 83 c3dnfB_ not modelled 15.4 14 PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway 84 d1pzxa_ not modelled 14.7 10 Fold:DAK1/DegV-like Superfamily:DAK1/DegV-like Family:DegV-like 85 d1k9vf_ not modelled 13.1 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 86 c3ke8A_ not modelled 12.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate PDBTitle: crystal structure of isph:hmbpp-complex 87 c2r47C_ not modelled 12.7 13 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein mth_862; PDBTitle: crystal structure of mth_862 protein of unknown function from2 methanothermobacter thermautotrophicus 88 c2o6lA_ not modelled 12.5 14 PDB header:transferase Chain: A: PDB Molecule:udp-glucuronosyltransferase 2b7; PDBTitle: crystal structure of the udp-glucuronic acid binding domain2 of the human drug metabolizing udp-glucuronosyltransferase3 2b7 89 c3i0zB_ not modelled 12.5 14 PDB header:isomerase Chain: B: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase; PDBTitle: crystal structure of putative putative tagatose-6-phosphate2 ketose/aldose isomerase (np_344614.1) from streptococcus pneumoniae3 tigr4 at 1.70 a resolution 90 d1vkra_ not modelled 11.8 9 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 91 c1vkrA_ not modelled 11.8 9 PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii 92 d1o1ya_ not modelled 11.7 6 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 93 d1fs0g_ not modelled 11.4 10 Fold:Pyruvate kinase C-terminal domain-like Superfamily:ATP synthase (F1-ATPase), gamma subunit Family:ATP synthase (F1-ATPase), gamma subunit 94 d1t35a_ not modelled 10.9 24 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 95 c3siiA_ not modelled 10.1 24 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:poly(adp-ribose) glycohydrolase; PDBTitle: the x-ray crystal structure of poly(adp-ribose) glycohydrolase bound2 to the inhibitor adp-hpd from thermomonospora curvata 96 d1jkea_ not modelled 10.0 18 Fold:DTD-like Superfamily:DTD-like Family:DTD-like 97 c3c3jA_ not modelled 10.0 18 PDB header:isomerase Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase; PDBTitle: crystal structure of tagatose-6-phosphate ketose/aldose isomerase from2 escherichia coli 98 c3quaA_ not modelled 9.6 7 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein and possible2 molybdenum cofactor protein from mycobacterium smegmatis 99 d1jvna2 not modelled 9.1 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0