|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | |
|
|
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
Query Sequence |   |
M | S | Q | L | V | Y | F | S | S | S | S | E | N | T | Q | R | F | I | E | R | L | G | L | P | A | V | R | . |
. |
. |
. |
. |
. |
. |
. |
I | P | L | N | E | R | E | R | I | Q | V | D | E | P | Y | I | L | I | V | P | S | Y | G | G | G | G | T | A | G | A | V | P | R | Q | V | I | R | F | L | N | D | E | . |
. |
. |
Query Conservation |   |
|   |   |
|
|   |
|   |
|   |
|
|
|
|
|   |   |
|   |   |
|   |   |   |   |   |   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |   | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
Template Conservation |   |
  |
|
|   |
|   |
|
|
|   |
|
|   |
|
|   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|   |
|   | . |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
Template Sequence |   |
V | K | A | T | I | L | Y | A | T | E | T | G | K | S | Q | A | Y | A | K | T | L | C | E | I | F | K | H | A | F | D | A | K | A | M | S | M | E | E | Y | D | I | V | H | L | E | H | E | A | L | V | L | V | V | T | S | T | F | G | N | G | D | . |
P | P | E | N | G | E | K | F | G | C | A | L | M | E | M | R | H | E |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |
| S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | S |  |  |  |  |  |  | T | T | T | S |
| T | T | S | G | G | G |
| S |  |  |  |  |  |  |
|
| B | T | T | T | B | . |
|
| G | G | G |  |  |  |  |  |  |  |  |  |  | T |
|
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
753 | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . | . | . | . | 790 | . | . | . | . | . | . | . | . | . | 800 | . | . | . | . | . | . | . | . | . | 810 | . | . | . | |
. | . | . | . | . | . | 820 | . | . | . | . | . | . | . | . | . | 830 | . |
  |
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | |
|
|
|
. | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
H | N | R | A | L | L | R | G | V | I | A | S | G | N | R | N | F | G | E | A | Y | G | R | A | G | D | V | I | A | R | K | C | . |
. |
. |
. |
G | V | P | W | L | Y | R | F | E | L | M | G | T | Q | S | D | I | E | N | V | R | K | G | V | T | E | F | W | Q | R |
Query Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |
|
|   |
|   |
|   |   |   |
|   |   |   |
|
|   |
|   |
|   |
|   |   |   |   | . | . | . | . |   |   |
|   |   |   |
|   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|
|
|
|
|   |
|   | . |   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |
|
|
|   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |
Template Sequence |   |
E | R | K | S | Y | K | V | R | F | N | S | V | S | G | P | L | A | N | V | R | F | S | V | F | G | L | G | S | R | A | Y | P | . |
H | F | C | A | F | G | H | A | V | D | T | L | L | E | E | L | G | G | E | R | I | L | K | M | R | E | G | D | E | L | C | G | Q | E | E | A | F | R | T | W | A | K | K | V | F | K | A |
Template Known Secondary structure |   |
|
|
|
|  |  |  |  | T | S |
|
|
|
| T | T | T | T |
|  |  |  |  |  |  |  |  |
| T | T | S | S | . | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  | S | S |
|
|  |  |  |  | T | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
837 | . | . | 840 | . | . | . | . | . | . | . | . | . | 850 | . | . | . | . | . | . | . | . | . | 860 | . | . | . | . | . | . | . | . | |
. | 870 | . | . | . | . | . | . | . | . | . | 880 | . | . | . | . | . | . | . | . | . | 890 | . | . | . | . | . | . | . | . | . | 900 | . | . | . | . | . | . | . | . | . | 910 | . | . | . | . | . |
  |