Job Description P76542 Confidence 78.85% Date Thu Jan 5 12:24:15 GMT 2012 Rank 39 Aligned Residues 117 % Identity 15% Template d1a41a_ SCOP info DNA breaking-rejoining enzymes DNA breaking-rejoining enzymes Eukaryotic DNA topoisomerase I, catalytic core Resolution 2.30

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		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		L	R	L	C	R	W	E	W	I	N	L	E	D	A	T	I	T	L	P	A	E	V	M	K	A	R	R	P	H	V	V	P	.	L	S	R	Q	A	V	E	L	L	Q	D	Q	F	T	R	S	G	Y	S	A	F	V	F	P	G	R	F	M	D	K	P	L	S	A	S	A	I	L	K	A	L	E	R	I	G	Y	K
Query Conservation																																		.
Alig confidence																																		.																								.	.	.	.	.	.														.	.	.	.
Template Conservation																																																										.	.	.	.	.	.														.	.	.	.
Template Sequence		L	L	T	L	K	N	K	H	I	E	I	S	P	D	E	I	V	I	K	F	V	G	K	D	K	V	S	H	E	F	V	V	H	K	S	N	R	L	Y	K	P	L	L	K	L	T	D	D	S	S	P	E	E	F	L	F	.	.	.	.	.	.	N	K	L	S	E	R	K	V	Y	E	C	I	K	.	.	.	.	Q
Template Known Secondary structure				T		B	G	G	G					T	T									T	T	T									T	T	S	S	S										T	T		T	T	S	B	S	S	.	.	.	.	.	.	T	T												.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.														.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200							.	.	.	.	.	.	.	.	.	210	.	.	.					.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.																				.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	A	T	G	H	G	W	R	T	T	F	S	T	A	L	N	E	S	G	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	D	W	I	E	I	Q	L	A	H	V	P	K	G	I	R	G	V	Y	N	Q	A	A	Y	L	K
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.
Template Sequence		F	G	I	R	I	K	D	L	R	T	Y	G	V	N	Y	T	F	L	Y	N	.	F	W	T	N	V	K	S	I	S	P	L	P	S	P	K	K	L	I	A	L	T	I	K	Q	T	A	E	V	V	G	H	T	P	S	I	S	K	R	A	Y	M	A	T	T	I	L	E
Template Known Secondary structure		T	T																			.								S	S	S																				S	S
Template Predicted Secondary structure																						.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions