Job Description P76542 Confidence 98.79% Date Thu Jan 5 12:24:15 GMT 2012 Rank 20 Aligned Residues 107 % Identity 24% Template c2kkvA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of an integrase domain from protein2 spa4288 from salmonella enterica, northeast structural3 genomics consortium target slr105h Resolution UNK

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		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		G	F	K	K	V	A	E	D	W	F	A	T	R	V	G	G	W	S	E	S	Y	A	K	Q	V	R	S	A	L	E	K	D	V	Y	P	V	L	G	K	R	S	I	V	D	I	T	A	R	D	V	L	A	L	L	Q	K	K	E	R	.	T	A	P	E	Q	A	R	K	L	R	R	R	I	G	E	I	F	K	F	A
Query Conservation																																																													.
Alig confidence																.																																													.
Template Conservation																.
Template Sequence		T	F	E	T	I	A	R	E	W	H	E	S	N	K	.	R	W	S	E	D	H	R	S	R	V	L	R	Y	L	E	L	Y	I	F	P	H	I	G	S	S	D	I	R	Q	L	K	T	S	H	L	L	A	P	I	K	E	V	D	T	S	G	K	H	D	V	A	Q	R	L	Q	Q	R	V	T	A	I	M	R	Y	A
Template Known Secondary structure		S										T	T			.	S	S																	S	S	S	S	T	T	S		T	T				S	G	G	G										T	T	T
Template Predicted Secondary structure																.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	T	E	L	V	T	R	N	P	V	A	D	L	D	T	A	L	K	A	R	R	P	G	H	N	A	W	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	N	D	Y	I	D	S	N	P	A	S	D	M	A	G	A	L	S	T	T	K	A	R	H	Y	P	L	E
Template Known Secondary structure				T	T	S	S		S		S		S	S	S	S				S						S	S			T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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