Job Description P76542 Confidence 94.20% Date Thu Jan 5 12:24:15 GMT 2012 Rank 32 Aligned Residues 130 % Identity 15% Template c2h7fX_ PDB info PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.												.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.																																	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.																																	.
Query Sequence		Q	I	Q	T	A	I	R	L	L	I	L	T	A	L	R	T	A	E	.	.	.	.	.	.	.	.	.	.	.	L	R	L	C	R	W	E	W	I	N	L	E	D	A	T	I	T	L	P	A	E	V	M	K	A	R	R	P	H	V	V	P	.	L	S	R	Q	A	V	E	L	L	Q	D	Q	F	T	R	S	G	Y
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.																																	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation
Template Sequence		Q	L	A	V	F	M	L	M	E	T	M	F	F	I	R	F	G	K	M	K	Y	L	K	E	N	E	T	V	G	L	L	T	L	K	N	K	H	I	E	I	S	P	D	K	I	V	I	K	F	V	G	K	D	K	V	S	H	E	F	V	V	H	K	S	N	R	L	Y	K	P	L	L	K	L	T	D	D	S	S	P
Template Known Secondary structure																															S	T	T		B	G	G	G					S	S									G	G	G									T	T	S	T	T										T	T		T
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.																				.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	F	V	F	P	G	R	F	M	D	K	P	L	S	A	S	A	I	L	K	A	L	E	R	I	G	Y	K	S	I	A	T	G	H	G	W	R	T	T	F	S	T	A	L	N	E	S	G	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	D	W	I	E	I	Q	L	A
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																.	.	.	.																				.		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.																.	.	.	.																				.
Template Sequence		E	E	F	L	F	.	.	.	.	.	.	N	K	L	S	E	R	K	V	Y	E	S	I	K	Q	F	.	.	.	.	G	I	R	I	K	D	L	R	T	Y	G	V	N	Y	T	F	L	Y	N	.	F	W	T	N	V	K	S	I	S	P	L	P	S	P	K	K	L	I	A	L	T	I	K	Q	T	A	E	V	V	G
Template Known Secondary structure		T	S	B	T	T	.	.	.	.	.	.	T	T											G	G	G	.	.	.	.	T																			.								S	S	S																				T
Template Predicted Secondary structure							.	.	.	.	.	.																.	.	.	.																				.
Template SS confidence
		196	.	.	.	200							.	.	.	.	.	.	.	.	.	210	.	.	.	.	.					.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		359	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	P	K	G	I	R	G	V	Y	N	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	T	P	S	I	S	K	R	A	M	A	T
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions