Job Description P76542 Confidence 100.00% Date Thu Jan 5 12:24:15 GMT 2012 Rank 1 Aligned Residues 324 % Identity 17% Template c1z1bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site Resolution 3.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	T	P	G	L	F	L	L	V	H	P	N	G	S	K	Y	W	R	F	R	Y	W	L	N	K	R	E	F	L	Q	A	I	G	V	Y	P	L	I	T	L	K	E	A	R	R	R	A	T	E	S	R	S	L	I	A	N	G	I	N	P	V	E	Q	A	R	K	E	K	A	I	D	A	L	N	M	A	A	G	F
Query Conservation
Alig confidence											.	.	.	.															.	.																																						.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.															.	.																																						.	.	.	.	.	.	.	.
Template Sequence		D	L	P	P	N	L	Y	I	R	.	.	.	.	N	N	G	Y	Y	C	Y	R	D	P	R	T	G	K	.	.	E	F	G	L	G	R	D	R	R	I	A	I	T	E	A	I	Q	A	N	I	E	L	F	S	G	H	K	H	K	P	L	T	A	R	I	N	S	.	.	.	.	.	.	.	.	D	N	S	V	T	L
Template Known Secondary structure					T	T					.	.	.	.	T	T	T							T	T	T			.	.						S																																.	.	.	.	.	.	.	.			S		B
Template Predicted Secondary structure											.	.	.	.															.	.																																						.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.					20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70									.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure												.																																														.
Query SS confidence												.																																														.
Query Sequence		K	K	V	A	E	D	W	F	A	T	.	R	V	G	G	W	S	E	S	Y	A	K	Q	V	R	S	A	L	E	K	D	V	Y	P	V	L	G	K	R	S	I	V	D	I	T	A	R	D	V	L	A	L	L	Q	K	K	.	E	R	T	A	P	E	Q	A	R	K	L	R	R	R	I	G	E	I	F	K	F	A	V
Query Conservation												.																																														.
Alig confidence												.																			.																											.
Template Conservation																															.
Template Sequence		H	S	W	L	D	R	Y	E	K	I	L	A	S	R	G	I	K	Q	K	T	L	I	N	Y	M	S	K	I	K	.	A	I	R	R	G	L	P	D	A	P	L	E	D	I	T	T	K	E	I	A	A	M	L	N	G	Y	I	D	E	G	K	A	A	S	A	K	L	I	R	S	T	L	S	D	A	F	R	E	A	I
Template Known Secondary structure														T	T	T															.						S		S		B	G	G	G																T	T
Template Predicted Secondary structure																															.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	E	L	V	T	R	N	P	V	A	D	L	D	T	A	L	K	A	R	R	P	G	H	N	A	W	I	P	I	S	E	I	P	A	F	Y	K	A	L	E	R	A	G	S	V	Q	I	Q	T	A	I	R	L	L	I	L	T	A	L	R	T	A	E	L	R	L	C	R	W	E	W	I	N	L	E	D	A	T	I
Query Conservation
Alig confidence																.	.	.	.
Template Conservation																.	.	.	.
Template Sequence		A	E	G	H	I	T	T	N	H	V	A	A	T	R	.	.	.	.	A	A	K	S	K	V	R	R	S	R	L	T	A	D	E	Y	L	K	I	Y	Q	A	A	E	S	S	P	C	W	L	R	L	A	M	E	L	A	V	V	T	G	Q	R	V	G	D	L	C	E	M	K	W	S	D	I	V	D	G	Y	L	Y	V
Template Known Secondary structure			T	T	S		S	S		T	T	T	T	S		.	.	.	.								B															T	T	S	S																						T	T		B	G	G	G			T	T
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.					170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		264	.	.	.	.	.	270	.	.	.				.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.				.	.	330	.	.	.	.	.
Predicted Secondary structure												.	.	.																																								.	.																.	.	.
Query SS confidence												.	.	.																																								.	.																.	.	.
Query Sequence		T	L	P	A	E	V	M	K	A	R	.	.	.	R	P	H	V	V	P	L	S	R	Q	A	V	E	L	L	Q	D	Q	F	T	R	S	G	Y	S	A	F	V	F	P	G	R	F	M	D	K	P	L	S	.	.	A	S	A	I	L	K	A	L	E	R	I	G	Y	K	S	.	.	.	I	A	T	G	H	G	W	R
Query Conservation												.	.	.																																								.	.																.	.	.
Alig confidence												.	.	.																																								.	.																.	.	.
Template Conservation
Template Sequence		E	Q	S	K	T	G	V	K	I	A	I	P	T	A	L	H	I	D	A	L	G	I	S	M	K	E	T	L	D	K	C	K	E	I	L	G	G	E	T	I	I	A	S	T	R	R	E	P	L	S	S	G	T	V	S	R	Y	F	M	R	A	R	K	A	S	G	L	S	F	E	G	D	P	P	T	F	H	E	L	R
Template Known Secondary structure				T	T	T								T	T				T	T	T	T														T		S	S	B	S	S			T	T	S																				T				S	S	B				T	T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	F	S	T	A	L	N	E	S	G	R	Y	S	P	D	W	I	E	I	Q	L	A	H	V	P	K	G	I	R	G	V	Y	N	Q
Query Conservation
Alig confidence			.										.
Template Conservation			.										.
Template Sequence		S	.	L	S	A	R	L	Y	E	K	Q	.	I	S	D	K	F	A	Q	H	L	L	G	H	K	S	D	T	M	A	S	Q	R	D	D
Template Known Secondary structure			.										.	T										T		S	S					T
Template Predicted Secondary structure			.										.
Template SS confidence
		312		.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions