Job Description P76542 Confidence 99.94% Date Thu Jan 5 12:24:15 GMT 2012 Rank 3 Aligned Residues 281 % Identity 16% Template c1ma7A_ PDB info PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 Resolution 2.30 Å

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		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																			.																											.	.
Query SS confidence																		.	.																			.																											.	.
Query Sequence		G	F	K	K	V	A	E	D	W	F	A	T	R	V	G	G	.	.	W	S	E	S	Y	A	K	Q	V	R	S	A	L	E	K	D	V	Y	.	P	V	L	G	K	R	S	I	V	D	I	T	A	R	D	V	L	A	L	L	Q	K	K	E	R	T	.	.	A	P	E	Q	A	R	K	L	R	R	R	I	G	E	I
Query Conservation																		.	.																			.																											.	.
Alig confidence																		.	.																			.																											.	.
Template Conservation
Template Sequence		T	S	D	E	V	R	K	N	L	M	D	M	F	R	D	R	Q	A	F	S	E	H	T	W	K	M	L	L	S	V	C	R	S	W	A	A	W	C	K	L	N	N	R	K	W	F	P	A	E	P	E	D	V	R	D	Y	L	L	Y	L	Q	A	R	G	L	A	V	K	T	I	Q	Q	H	L	G	Q	L	N	M	L
Template Known Secondary structure																T	G	G	G	S																						T	T				S	S															T	T	T
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.										.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.
Query Sequence		F	K	F	A	V	I	T	E	L	V	T	R	N	P	V	A	D	L	.	.	.	.	.	.	.	.	.	D	T	A	L	K	A	R	R	P	G	H	N	A	W	I	P	I	S	E	I	P	A	F	Y	K	A	L	E	R	A	G	S	V	Q	I	Q	T	A	I	R	L	L	I	L	T	A	L	R	T	A	E	L	R
Query Conservation																				.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	R	R	S	G	L	P	R	P	S	D	S	N	A	V	S	L	V	M	R	R	I	R	K	E	N	V	D	A	G	E	R	A	K	Q	A	L	A	F	E	R	T	D	F	D	Q	V	R	S	L	M	E	N	S	D	R	C	Q	D	I	R	N	L	A	F	L	G	I	A	Y	N	T	L	L	R	I	A	E	I	A
Template Known Secondary structure				T	T	T	S			G	G	G	S																T	T	T																						T	T																							S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270					.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.													.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																							.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	C	R	W	E	W	I	N	L	E	D	A	T	I	T	L	P	A	E	V	M	.	.	.	.	K	A	R	R	P	H	V	V	P	L	S	R	Q	A	V	E	L	L	Q	D	Q	F	T	R	S	G	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	A	F	V	F	P	G	R	F	M	D	K	P	L	S	A
Query Conservation																							.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	R	V	K	D	I	S	R	T	D	G	G	R	M	L	I	H	I	G	R	T	K	T	L	V	S	T	A	G	V	E	K	A	L	S	L	G	V	T	K	L	V	E	R	W	I	S	V	S	G	V	A	D	D	P	N	N	Y	L	F	C	R	V	R	K	N	G	V	A	A	P	S	A	T	S	Q	L	S	T
Template Known Secondary structure		S		B	S	S	S			S	T	T	T	T	S										S	S	S	S		S								T	T															S	S	S	T	T	S	B	S				B		T	T	S		B				S	S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.													.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	I	L	K	A	L	E	R	.	.	.	.	.	.	.	.	.	.	.	.	I	G	Y	K	S	I	A	T	G	H	G	W	R	T	T	F	S	T	A	L	N	E	S	G	R	Y	S	P	D	W	I	E	I	Q	L	A	H	V	P	K	G	I	R	G	V	Y	N	Q	A	A	Y	L	K	Q	R	R	A	M	M
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.																									.																								.
Template Conservation																																															.																								.
Template Sequence		R	A	L	E	G	I	F	E	A	T	H	R	L	I	Y	G	A	K	D	D	S	G	Q	R	Y	L	A	W	S	G	H	S	A	R	V	G	A	A	R	D	M	A	R	A	G	.	V	S	I	P	E	I	M	Q	A	G	G	W	T	N	V	N	I	V	M	N	Y	I	R	.	N	L	D	S	E	T	G	A	M	V
Template Known Secondary structure																T		S				S	S		S		S	S			T	T													T	T	.											T		S		S								T	.	T		G	G	G
Template Predicted Secondary structure																																															.																								.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.
		382	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	Y	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	L	E	D
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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