Job Description P76542 Confidence 83.36% Date Thu Jan 5 12:24:15 GMT 2012 Rank 37 Aligned Residues 107 % Identity 26% Template c1a31A_ PDB info PDB header:isomerase/dna Chain: A: PDB Molecule:protein (topoisomerase i); PDBTitle: human reconstituted dna topoisomerase i in covalent complex2 with a 22 base pair dna duplex Resolution 2.10 Å

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		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.													.	.	250	.	.	.	.	.	.	.	.							.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.																	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.																	.
Query Sequence		Q	I	Q	T	A	I	R	L	L	I	L	T	A	L	R	T	A	E	.	.	.	.	.	.	.	.	.	.	.	.	L	R	L	C	R	W	E	W	I	N	L	.	.	.	.	.	.	E	D	A	T	I	T	L	P	A	E	V	M	K	A	R	R	.	P	H	V	V	P	L	S	R	Q	A	V	E	L	L	Q	D
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.																	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.																	.
Template Conservation
Template Sequence		Q	R	A	V	A	L	Y	F	I	D	K	L	A	L	R	A	G	N	E	K	E	E	G	E	T	A	D	T	V	G	C	C	S	L	R	V	E	H	I	N	L	H	P	E	L	D	G	Q	E	Y	V	V	E	F	D	F	L	G	K	D	S	I	R	Y	Y	N	K	V	P	V	E	K	R	V	F	K	N	L	Q	L
Template Known Secondary structure																							T	T	T	S						G	G	G		B	G	G	G								T	T												G	G	G
Template Predicted Secondary structure
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	T	R	S	G	Y	S	A	F	V	F	P	G	R	F	M	D	K	P	L	S	A	S	A	I	L	K	A	L	E	R	I	G	Y	K	S	I	A	T	G	H	G	W	R	T	T	F	S	T	A	L	N	E
Query Conservation
Alig confidence														.	.	.	.	.	.																	.	.
Template Conservation														.	.	.	.	.	.																	.	.
Template Sequence		F	M	E	N	K	Q	P	E	D	D	L	F	.	.	.	.	.	.	D	R	L	N	T	G	I	L	N	K	H	L	Q	D	L	M	.	.	E	G	L	T	A	K	V	F	R	T	Y	N	A	S	I	T	L	Q
Template Known Secondary structure		T	T	T	T			T	T	S	B	T	T	.	.	.	.	.	.	T	T														S	.	.	T	T
Template Predicted Secondary structure														.	.	.	.	.	.																	.	.
Template SS confidence
		554	.	.	.	.	.	560	.	.	.	.	.							.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.			.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions