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Job DescriptionP76542
Confidence99.90%DateThu Jan 5 12:24:15 GMT 2012
Rank7Aligned Residues257
% Identity16%Templatec1a0pA_
PDB info PDB header:dna recombinationChain: A: PDB Molecule:site-specific recombinase xerd; PDBTitle: site-specific recombinase, xerd
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   107..110....... ..120.........130.........140.. .......150.........160.........170.........180...
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Query Sequence  KVAEDWFATRV. . GGWSESYAKQVRSALEKDVYPVLGK. RSIVDITARDVLALLQKKERTAPEQARKLRRRIGEIFKFAV
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Template Sequence  ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA. . . . . ERLSSARLLSAVRRLFQYLY
Template Known Secondary structure  TT
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TS

TTT

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   6...10.........20.........30.........40.........50.........60 .........70.........80
 
   184.....190.........200.........210.........220.........230.........240.........250.........260...
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Query Sequence  ITELVTRNPVADLDTALKARRPGHNAWIPISEIPAFYKALERAGSVQIQTAIRLLILTALRTAELRLCRWEWINLEDATI
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Template Sequence  REKFREDDPSAHLKDLSEA. . . . . . . . . . QVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVV
Template Known Secondary structure  TTSSSS
TTS





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TT
BGGGTTTT
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   88.90.........100...... ...110.........120.........130.........140.........150.......
 
   264.....270.........280.........290.... .....300.........310.........320.........330.....
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Query Sequence  TLPAEVMKARRPHVVPLSRQAVELLQDQFTR. . . . . . . . SGYSAFVFPGRFMDKPLSASAILKALERIGYKSIATGHGWR
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Template Sequence  RVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR
Template Known Secondary structure 
SSS


TTT



BSSB
TTSSB

TT

GGG

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   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   336...340.........350.........360.........370.........380..
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Query Sequence  TTFSTALNESGRYSPDWIEIQLAHVPKGIRGVYNQAAYLKQRRAMMQ
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Template Sequence  HAFATHLLNHG. ADLRVVQMLLSDLS. . TTQIYTHVA. TERLRQLHQ
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GGGSS





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   248.250........ .260.........270.. .......280. ........290
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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