Job Description P76542 Confidence 99.90% Date Thu Jan 5 12:24:15 GMT 2012 Rank 7 Aligned Residues 257 % Identity 16% Template c1a0pA_ PDB info PDB header:dna recombination Chain: A: PDB Molecule:site-specific recombinase xerd; PDBTitle: site-specific recombinase, xerd Resolution 2.50 Å

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		107	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure													.	.																										.
Query SS confidence													.	.																										.
Query Sequence		K	V	A	E	D	W	F	A	T	R	V	.	.	G	G	W	S	E	S	Y	A	K	Q	V	R	S	A	L	E	K	D	V	Y	P	V	L	G	K	.	R	S	I	V	D	I	T	A	R	D	V	L	A	L	L	Q	K	K	E	R	T	A	P	E	Q	A	R	K	L	R	R	R	I	G	E	I	F	K	F	A	V
Query Conservation													.	.																										.
Alig confidence													.	.																										.																	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.
Template Sequence		A	R	I	E	Q	F	L	D	A	L	W	L	E	K	N	L	A	E	N	T	L	N	A	Y	R	R	D	L	S	M	M	V	E	W	L	H	H	R	G	L	T	L	A	T	A	Q	S	D	D	L	Q	A	L	L	A	.	.	.	.	.	E	R	L	S	S	A	R	L	L	S	A	V	R	R	L	F	Q	Y	L	Y
Template Known Secondary structure														T	T		S																						T	S			T	T	T												.	.	.	.	.	S
Template Predicted Secondary structure																																																									.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	E	L	V	T	R	N	P	V	A	D	L	D	T	A	L	K	A	R	R	P	G	H	N	A	W	I	P	I	S	E	I	P	A	F	Y	K	A	L	E	R	A	G	S	V	Q	I	Q	T	A	I	R	L	L	I	L	T	A	L	R	T	A	E	L	R	L	C	R	W	E	W	I	N	L	E	D	A	T	I
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.
Template Sequence		R	E	K	F	R	E	D	D	P	S	A	H	L	K	D	L	S	E	A	.	.	.	.	.	.	.	.	.	.	Q	V	E	R	L	L	Q	A	P	L	I	D	Q	P	L	E	L	R	D	K	A	M	L	E	V	L	Y	A	T	G	L	R	V	S	E	L	V	G	L	T	M	S	D	I	S	L	R	Q	G	V	V
Template Known Secondary structure			T	T	S	S	S	S		T	T	S									.	.	.	.	.	.	.	.	.	.									S		T	T	S																								T	T		B	G	G	G			T	T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.											.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.									.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.
Query Sequence		T	L	P	A	E	V	M	K	A	R	R	P	H	V	V	P	L	S	R	Q	A	V	E	L	L	Q	D	Q	F	T	R	.	.	.	.	.	.	.	.	S	G	Y	S	A	F	V	F	P	G	R	F	M	D	K	P	L	S	A	S	A	I	L	K	A	L	E	R	I	G	Y	K	S	I	A	T	G	H	G	W	R
Query Conservation																																	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	I	G	K	G	N	K	E	R	L	V	P	L	G	E	E	A	V	Y	W	L	E	T	Y	L	E	H	G	R	P	W	L	L	N	G	V	S	I	D	V	L	F	P	S	Q	R	A	Q	Q	M	T	R	Q	T	F	W	H	R	I	K	H	Y	A	V	L	A	G	I	D	S	E	K	L	S	P	H	V	L	R
Template Known Secondary structure						S	S	S																						T						T	T					B	S	S	B		T	T	S	S	B																	T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	F	S	T	A	L	N	E	S	G	R	Y	S	P	D	W	I	E	I	Q	L	A	H	V	P	K	G	I	R	G	V	Y	N	Q	A	A	Y	L	K	Q	R	R	A	M	M	Q
Query Conservation
Alig confidence													.															.	.										.
Template Conservation													.															.	.										.
Template Sequence		H	A	F	A	T	H	L	L	N	H	G	.	A	D	L	R	V	V	Q	M	L	L	S	D	L	S	.	.	T	T	Q	I	Y	T	H	V	A	.	T	E	R	L	R	Q	L	H	Q
Template Known Secondary structure													.	S	S		G	G	G	S	S							.	.										.
Template Predicted Secondary structure													.															.	.										.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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