 |
Job Description | P24203 | Confidence | 95.77% | Date | Thu Jan 5 11:41:12 GMT 2012 |
Rank | 256 | Aligned Residues | 132 |
% Identity | 17% | Template | d2b8ta1 |
SCOP info | P-loop containing nucleoside triphosphate hydrolases
| P-loop containing nucleoside triphosphate hydrolases
| Type II thymidine kinase
|
Resolution | 2.00 |
|
 |
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | |
|
. | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | T | L | L | T | G | F | L | G | A | G | K | T | T | L | L | R | H | I | L | N | E | Q | . |
. |
H | G | Y | K | I | A | V | I | E | N | E | F | G | E | V | S | V | D | D | Q | L | I | G | D | R | A | T | Q | I | K | T | L | T | N | G | C | I | C | C | S | R | S | N | E | L | E | D | A | L | L | D | L | L | D | N |
Query Conservation |   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|   |   |   | . | . |   |   |   |   |   |
|
|
|   |
|
|   |
|   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |
|
|   |   |
|   |
| . |   |   |   |   |
|   |
|
|   |
|   |   |   |   | . | . | . | . | . |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
I | E | F | I | T | G | P | M | F | A | G | K | T | A | E | L | I | R | R | L | H | R | L | E | Y | A | D | V | K | Y | L | V | F | K | P | K | I | D | T | R | . |
S | I | R | N | I | Q | S | R | T | G | T | S | L | P | . |
. |
. |
. |
. |
S | V | E | V | E | S | A | P | E | I | L | N | Y | I | M | S | N | S | F | N |
Template Known Secondary structure |   |
 |  |  |  |  |
| S | T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |
|
|
| G | G | . | G |
| S | S |
|
|
|
|
|
|
| S | S |
| . | . | . | . | . |
|  |  |  | S | S | T |  |  |  |  |  |  |  |  | S | T | T | S |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
| . |
|
|
|
|  |  |  |
|
|
|
|  |  |  | . | . | . | . | . |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | |
. | . | . | . | . | . | 60 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . |
  |
  |   |
84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | D | K | G | N | I | Q | F | D | R | L | V | I | E | C | T | G | M | A | D | P | G | P | I | I | Q | T | F | F | S | H | E | V | L | C | Q | R | Y | L | L | D | G | V | I | A | L | V | D | A | V | H | A | D | E | Q | M | N | Q | F | T | I | A | Q | S | Q | V | G | Y | A | D | R | I | L |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |
|
|
|
|   |
|
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |
|
|
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . |   |   |   |
|
|
|   |
|
|
|
|
|
|
|   | . |   |   |
|   |   |   |   |   |   |   |   |   |   |
| . | . | . | . | . | . | . |   |   |
|
|
|   |
|
|
|   |
|
|   |   |   |   |
|   |   |   |   |   |
|
|   |   |
|
|   |
|   |
Template Sequence |   |
. |
. |
. |
. |
. |
D | E | T | K | V | I | G | I | D | E | V | Q | F | F | D | . |
D | R | I | C | E | V | A | N | I | L | A | E | N | G | . |
. |
. |
. |
. |
. |
. |
F | V | V | I | I | S | G | L | D | K | N | F | K | G | E | P | F | G | P | I | A | K | L | F | T | Y | A | D | K | I | T |
Template Known Secondary structure |   |
. | . | . | . | . | T | T |
|
|  |  |  |  |
| S | G | G | G | S |
| . | T |  |  |  |  |  |  |  |  |  |  |  | T | T | . | . | . | . | . | . | . |
|  |  |  |  |  |
|
| S | B |
| T | T | S | S | B |
| T | T |  |  |  |  |  |  |  |
| S |  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
88 | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | |
. | . | . | . | . | . | . | 110 | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|