Job Description P24203 Confidence 98.67% Date Thu Jan 5 11:41:12 GMT 2012 Rank 31 Aligned Residues 122 % Identity 22% Template c2wwwB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:methylmalonic aciduria type a protein, PDBTitle: crystal structure of methylmalonic acidemia type a protein Resolution 2.64 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		N	P	I	A	V	T	L	L	T	G	F	L	G	A	G	K	T	T	L	L	R	H	I	L	N	E	Q	H	.	.	G	Y	K	I	A	V	I	E	N	E	F	G	E	V	S	V	D	D	Q	L	I	G	D	R	A	T	Q	I	K	T	L	T	N	G	C	I	C	C	S	R	S	N	E	L	E	D	A	L	L	D
Query Conservation																														.	.
Alig confidence																														.	.																.	.	.	.	.	.	.	.	.									.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.									.	.	.	.	.	.
Template Sequence		P	L	A	F	R	V	G	L	S	G	P	P	G	A	G	K	S	T	F	I	E	Y	F	G	K	M	L	T	E	R	G	H	K	L	S	V	L	A	V	D	T	E	L	S	R	.	.	.	.	.	.	.	.	.	D	M	N	A	Y	I	R	P	.	.	.	.	.	.	T	R	T	T	N	E	A	I	L	L	C	E
Template Known Secondary structure			S	S									T	T	S	S															T	T												S	S	S	.	.	.	.	.	.	.	.	.		T	T						.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.									.	.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.										.	.	.	.	190	.	.	.							.	.	.	.	.	.	200	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	D	N	L	D	K	G	N	I	Q	F	D	R	L	V	I	E	C	T	G	M	A	D	P	G	P	I	I	Q	T	F	F	S	H	E	V	L	C	Q	R	Y	L	L	D	G	V	I	A	L	V	D	A	V	H	A	D	E	Q	M	N	Q	F	T	I	A	Q	S	Q	V	G	Y	A	D	R	I	L	L	T	K
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	.	.	.	.	.	.	.	.	A	G	Y	D	I	I	L	I	E	T	V	G	Q	S	E	F	A	V	A	D	M	V	.	.	.	.	.	.	.	.	.	.	.	.	.	D	M	F	V	L	L	L	P	P	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	M	A	D	L	V	A	V	T	K
Template Known Secondary structure			.	.	.	.	.	.	.	.	T	T		S																T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S		S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233									.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.														.	.	.	.	260	.	.	.	.	.																.	.	.	.	270	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	V	A	G	E	A	E	K	L	H	E	R	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	G	D	L	I	V	P	A	R	R	I	Q	A	E
Template Known Secondary structure			S	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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