Job Description P24203 Confidence 99.19% Date Thu Jan 5 11:41:12 GMT 2012 Rank 11 Aligned Residues 163 % Identity 16% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																												.	.													.	.	.
Query SS confidence																												.	.													.	.	.
Query Sequence		N	P	I	A	V	T	L	L	T	G	F	L	G	A	G	K	T	T	L	L	R	H	I	L	N	E	.	.	Q	H	G	Y	K	I	A	V	I	E	N	E	.	.	.	F	G	E	V	S	V	D	D	Q	L	I	G	D	R	A	T	Q	I	K	T	L	T	N	G	C	I	C	C	S	R	S	N	E	L	E	D	A
Query Conservation																												.	.													.	.	.
Alig confidence																												.	.													.	.	.																										.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	.	.	.	S	P	E	S	I	R	R	R	V
Template Known Secondary structure			S	S									T	T	S	S															T	T										S	S																T								T	T		.	.	.
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		L	L	D	L	L	D	N	L	D	K	G	N	I	Q	F	D	R	L	V	I	E	C	T	G	.	M	A	D	P	G	P	I	I	Q	T	F	F	S	H	E	V	L	C	Q	R	Y	L	L	D	G	V	I	A	L	V	D	A	V	H	A	D	E	Q	M	N	Q	F	T	I	A	Q	S	Q	V	G	Y	A	D	R	I
Query Conservation																										.
Alig confidence									.	.	.	.	.	.												.												.	.	.																																						.
Template Conservation									.	.	.	.	.	.																								.	.	.																																						.
Template Sequence		E	E	K	A	R	L	E	.	.	.	.	.	.	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	.	.	.	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V	A	R	A	F	D	E	K	V	G	V	.	T	G	L
Template Known Secondary structure									.	.	.	.	.	.	T		S										S	S										.	.	.										S								S	S	S		S													S			.
Template Predicted Secondary structure									.	.	.	.	.	.																								.	.	.																																						.
Template SS confidence
		173	.	.	.	.	.	.							180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	T	K	T	D	V	A	G	E	A	E	K	L	H	E	R	L	A	R	I	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	T	K	L	D	G	D	A	R	G	G	A	A	L	S	A	R	H	V	T	G
Template Known Secondary structure						S	S	S		S												S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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