Job Description P24203 Confidence 97.90% Date Thu Jan 5 11:41:12 GMT 2012 Rank 44 Aligned Residues 144 % Identity 20% Template c1wb1C_ PDB info PDB header:protein synthesis Chain: C: PDB Molecule:translation elongation factor selb; PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp Resolution 3.0 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	P	I	A	V	T	L	L	T	G	F	L	G	A	G	K	T	T	L	L	R	H	I	L	N	E	Q	H	G	Y	K	I	A	V	I	E	N	E	F	G	E	V	S	V	D	D	Q	L	I	G	D	R	A	T	Q	I	K	T	L	T	N	G	C	I	C	C	S	R	S	N	E	L	E	D	A	L	L	D	L
Query Conservation
Alig confidence											.																							.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																							.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	K	N	I	N	L	G	I	F	.	G	H	I	D	H	G	K	T	T	L	S	K	V	L	T	E	I	A	S	T	S	A	.	.	.	.	.	H	D	K	L	P	E	S	Q	K	R	G	I	T	I	D	I	G	F	S	A	F	K	L	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			B								.			T	T	S	S	T	T							T	T	T	S	S		S	S	.	.	.	.	.		S	S	S	S	T	T	T	T	S						S	S							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.																							.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		L	D	N	L	D	K	G	N	I	Q	F	D	R	L	V	I	E	C	T	G	M	A	D	P	G	P	I	I	Q	T	F	F	S	H	E	V	L	C	Q	R	Y	L	L	D	G	V	I	A	L	V	D	A	V	H	.	A	D	E	Q	M	N	Q	F	T	I	A	Q	S	Q	V	G	Y	A	D	R	I	L	L	T	K
Query Conservation																																																								.
Alig confidence		.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.													.
Template Conservation		.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	Y	R	I	T	L	V	D	A	P	G	H	A	D	L	I	R	A	V	V	S	A	A	D	I	.	.	.	.	.	.	.	.	I	D	L	A	L	I	V	V	D	A	K	E	G	P	K	T	Q	T	G	E	H	M	L	I	L	D	H	F	N	I	P	I	I	V	V	I	T	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.									S	S	S										S		S	S	.	.	.	.	.	.	.	.										T	T	T																T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Template SS confidence
												59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.									.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.							.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure									.	.											.	.	.	.	.	.
Query SS confidence									.	.											.	.	.	.	.	.
Query Sequence		T	D	V	A	G	E	A	.	.	E	K	L	H	E	R	L	A	R	I	.	.	.	.	.	.	N	A	R	A	P	V	Y	T	V	T
Query Conservation									.	.											.	.	.	.	.	.
Alig confidence									.	.											.	.	.	.	.	.
Template Conservation
Template Sequence		S	D	N	A	G	T	E	E	I	K	R	T	E	M	I	M	K	S	I	L	Q	S	T	H	N	L	K	N	S	S	I	I	P	I	S
Template Known Secondary structure			T	T	S																			S	S	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions