Job Description P77766 Confidence 99.85% Date Thu Jan 5 12:32:40 GMT 2012 Rank 13 Aligned Residues 189 % Identity 23% Template c3e0dA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase iii subunit alpha; PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit Resolution 4.60 Å

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		9	10	.	.	.	.	.	.	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.								.	.
Predicted Secondary structure													.	.																				.	.																																						.	.	.	.	.	.	.
Query SS confidence													.	.																				.	.																																						.	.	.	.	.	.	.
Query Sequence		I	Y	D	L	H	S	H	T	T	A	S	.	.	D	G	C	L	T	P	E	A	L	V	H	R	A	V	E	M	R	V	G	.	.	T	L	A	I	T	D	H	D	T	T	A	A	I	A	P	A	R	E	E	I	S	R	S	G	L	A	L	N	L	I	P	G	V	E	I	S	T	.	.	.	.	.	.	.	V	W
Query Conservation													.	.																				.	.																																						.	.	.	.	.	.	.
Alig confidence													.	.																				.	.																									.	.												.	.	.	.	.	.	.
Template Conservation																																																												.	.
Template Sequence		F	A	H	L	H	Q	H	T	Q	F	S	L	L	N	G	A	A	K	L	Q	D	L	L	K	W	V	K	E	T	T	P	E	D	P	A	L	A	M	T	D	H	G	N	L	F	G	A	V	E	F	Y	K	K	A	T	A	M	G	.	.	V	K	P	I	I	G	Y	E	A	Y	V	A	A	E	S	R	F	D	R	K
Template Known Secondary structure						S	B			T	T	S	T	T	T																		S	S									T			T	T										T	T	T	.	.													S	S		T	T
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																	.	.	.	.
Query SS confidence																																																	.	.	.	.
Query Sequence		E	N	H	E	I	H	I	V	G	L	N	I	D	I	T	H	P	L	M	C	E	F	L	A	Q	Q	T	E	R	R	N	Q	R	A	Q	L	I	A	E	R	L	E	K	A	Q	I	P	.	.	.	.	G	A	L	E	G	A	Q	R	L	A	Q	G	G	A	V	T	R	G	H	F	A	R	F	L	V	E	C	G	K
Query Conservation																																																	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	G	G	Y	F	H	L	T	L	L	A	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	G	Y	Q	N	L	V	R	L	A	S	R	A	Y	L	E	G	F	Y	E	K	P	R	I	D	R	E	I	L	R	E	H	A	Q	G	L	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														S	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T		B	S	S	S	B										T		T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.															.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		A	S	S	M	A	D	V	F	K	K	Y	L	A	R	G	K	T	G	Y	V	P	P	Q	W	C	T	I	E	Q	A	I	D	V	I	H	H	S	G	G	K	A	V	L	A	H	P	G	R	Y	N	L	S	A	K	W	L	K	R	L	V	A	H	F	A	E	H	H	G	D	.	.	A	M	E	V	A	Q	C	Q	Q
Query Conservation																																																																							.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	G	C	L	G	A	E	I	P	Q	F	I	L	Q	D	R	L	D	L	A	E	A	R	L	N	E	D	L	S	I	F	G	D	R	F	F	I	E	I	Q	N	H	G	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	T	T	B								T	T																	G	G	G								S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																					142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		232	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		S	P	N	E	.	.	R	T	Q	L	A	A	L	A	R	Q	H	H	L	W	A	S	Q	G	S	D	F	H	Q	P	C	P	W
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence		P	E	Q	K	K	V	N	Q	V	L	K	E	F	A	R	K	Y	G	L	G	M	V	A	T	N	N	G	H	Y	V	R	K	E
Template Known Secondary structure																		T	T									B	S	B	S	S	G	G
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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