Job Description P77766 Confidence 99.89% Date Thu Jan 5 12:32:40 GMT 2012 Rank 10 Aligned Residues 197 % Identity 20% Template c2hnhA_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii alpha subunit; PDBTitle: crystal structure of the catalytic alpha subunit of e. coli2 replicative dna polymerase iii Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		M	S	D	T	N	Y	A	V	I	Y	D	L	H	S	H	T	T	A	S	.	.	D	G	C	L	T	P	E	A	L	V	H	R	A	V	E	M	R	V	G	T	L	A	I	T	D	H	D	T	T	A	A	I	A	P	A	R	E	E	I	S	R	S	G	L	A	L	N	L	I	P	G	V	E	I	S	T	V	W	E
Query Conservation																					.	.
Alig confidence							.	.	.												.	.																																												.	.
Template Conservation							.	.	.																																																									.	.
Template Sequence		M	S	E	P	R	.	.	.	F	V	H	L	R	V	H	S	D	Y	S	M	I	D	G	L	A	K	T	A	P	L	V	K	K	A	A	A	L	G	M	P	A	L	A	I	T	D	F	T	N	L	C	G	L	V	K	F	Y	G	A	G	H	G	A	G	.	.	I	K	P	I	V	G	A	D	F	N	V	Q	C	D
Template Known Secondary structure							.	.	.						B			G	G	G	S	S	S			S												T	T		S							B	T			T	T												T	.	.														T
Template Predicted Secondary structure							.	.	.																																																									.	.
Template SS confidence
		1	.	.	.	.				.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.						.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																															.	.	.	.	.
Query SS confidence																																															.	.	.	.	.
Query Sequence		N	H	E	I	H	I	V	G	L	N	I	D	I	T	H	P	L	M	C	E	F	L	A	Q	Q	T	E	R	R	N	Q	R	A	Q	L	I	A	E	R	L	E	K	A	Q	I	.	.	.	.	.	P	G	A	L	E	G	A	Q	R	L	A	Q	G	G	A	V	T	R	G	H	F	A	R	F	L	V	E	C	G	K
Query Conservation																																															.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.																											.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.
Template Sequence		L	L	G	D	E	L	T	H	L	T	V	L	A	A	N	.	.	.	.	.	.	.	.	.	.	.	N	T	G	Y	Q	N	L	T	L	L	I	S	K	A	Y	Q	R	G	Y	G	A	A	G	P	I	I	D	R	D	W	L	I	E	L	N	E	G	L	I	L	L	S	G	G	R	M	G	D	V	G	.	.	.	.
Template Known Secondary structure		T	T	T	T											S	.	.	.	.	.	.	.	.	.	.	.																					T	T						T	T					S		T	T							G	G	G	S				.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90												.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		A	S	S	M	A	D	V	F	K	K	Y	L	A	R	G	K	T	G	Y	V	P	P	Q	W	C	T	I	E	Q	A	I	D	V	I	H	H	S	G	G	K	A	V	L	A	H	P	G	R	Y	N	L	S	A	K	W	L	K	R	L	V	A	H	F	A	E	H	H	G	D	.	.	A	M	E	V	A	Q	C	Q	Q
Query Conservation																																																																							.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	L	L	R	G	N	S	A	L	V	D	E	C	V	A	F	Y	E	E	H	F	P	D	R	Y	F	L	E	L	I	R	T	G	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T																	T	T	S								S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																															141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		232	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		S	P	N	E	.	.	R	T	Q	L	A	A	L	A	R	Q	H	H	L	W	A	S	Q	G	S	D	F	H	Q	P	C	P	W
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence		P	D	E	E	S	Y	L	H	A	A	V	E	L	A	E	A	R	G	L	P	V	V	A	T	N	D	V	R	F	I	D	S	S
Template Known Secondary structure		T	T																T									B		B	S	S	G	G
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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