Job Description P06282 Confidence 14.79% Date Thu Jan 5 10:59:08 GMT 2012 Rank 45 Aligned Residues 28 % Identity 29% Template c3dnlB_ PDB info PDB header:viral protein Chain: B: PDB Molecule:hiv-1 envelope glycoprotein gp120; PDBTitle: molecular structure for the hiv-1 gp120 trimer in the b12-2 bound state Resolution 20.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	L	E	E	C	L	P	N	Q	Q	Q	N	Q	N	P	S	P	C	A	E	V	K	P	N	A	G	Y	V	V	L	K
Query Conservation
Alig confidence									.	.	.									.
Template Conservation									.	.	.									.
Template Sequence		V	I	T	Q	A	C	P	.	.	.	K	V	S	F	E	P	I	P	.	I	H	Y	C	A	P	A	G	F	A	I	L	K
Template Known Secondary structure									.	.	.									.	B			B			S	S
Template Predicted Secondary structure									.	.	.									.
Template SS confidence
		200	.	.	.	.	.	.				.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions