Return to main results Retrieve Phyre Job Id

Job DescriptionP11551
Confidence100.00%DateThu Jan 5 11:32:44 GMT 2012
Rank2Aligned Residues411
% Identity8%Templated1pw4a_
SCOP infoMFS general substrate transporter MFS general substrate transporter Glycerol-3-phosphate transporter
Resolution3.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 






















Query SS confidence 















































































Query Sequence  NTSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAG
Query Conservation                     
             
  
          
       

    
 
 
    
  
     
Alig confidence 


















































.



























Template Conservation   
 
               
  
 
                      
   .  
 
    
 
 
       
     
Template Sequence  KPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV. EQGFSRGDLGFALSGISIAYGFSKFIMG
Template Known Secondary structure 










S

TSTT.SSTT
SS
Template Predicted Secondary structure 














.



Template SS confidence 















































































   6...10.........20.........30.........40.........50...... ...60.........70.........80....
 
   83......90.........100.........110. ........120.........130.........140.........150.........160.
Predicted Secondary structure 


.





Query SS confidence 




























.

















































Query Sequence  ILMKKLSYKAGIITGLFLYALGAALFWPA. AEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTF
Query Conservation   
 

 
 
  
            
    .                
                                 
Alig confidence 




























.

















































Template Conservation   
 

 


  
        
                         
                                 
Template Sequence  SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA
Template Known Secondary structure  S

SSSSTTT
TTT
Template Predicted Secondary structure 












Template SS confidence 















































































   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  NSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD
Query Conservation     
      
   
                                                                 
Alig confidence 

















































.....................








Template Conservation                                                    .....................         
Template Sequence  HNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS. . . . . . . . . . . . . . . . . . . . . CGLPPIEEY
Template Known Secondary structure  TST

STT
T


SSTT.....................T


S
TTT
Template Predicted Secondary structure 




























.....................




Template SS confidence 















































































   165....170.........180.........190.........200.........210.... .....220...
 
   242.......250.........260.........270.........280.........290.........300.........310.........320.
Predicted Secondary structure 




























































Query SS confidence 















































































Query Sequence  AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR
Query Conservation                                                                                  
Alig confidence 















































































Template Conservation                                                                           
 
    
Template Sequence  KNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV
Template Known Secondary structure 




TTSS
BTTBS


T
Template Predicted Secondary structure 



































Template SS confidence 















































































   224.....230.........240.........250.........260.........270.........280.........290.........300...
 
   322.......330.........340.... .....350.........360.........370.........380... ......390....
Predicted Secondary structure 










.....

..
Query SS confidence 






















. . . . .






































. .










Query Sequence  FAPHKVLAAYALIAMALCLISAF. . . . . AGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYG. . SSFIVMTIIGG
Query Conservation                         .....             
                         ..         
 
Alig confidence 






















.....






































..










Template Conservation                                           
                       
   
         
Template Sequence  FRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG
Template Known Secondary structure  STT
TTS

TT
TTS
TT
Template Predicted Secondary structure 
























Template SS confidence 















































































   317..320.........330.........340.........350.........360.........370.........380.........390......
 
   395. ...400.........410.........420.........430.....
Predicted Secondary structure  .



Query SS confidence 

.






































Query Sequence  GI. VTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFRSQT
Query Conservation   
. 
 
 
 
 
  
                        
 
Alig confidence 

.






































Template Conservation          
 
    
                          
Template Sequence  SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE
Template Known Secondary structure  SS
S
Template Predicted Secondary structure 



Template SS confidence 









































   397..400.........410.........420.........430........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions