Return to main results Retrieve Phyre Job Id

Job DescriptionP11551
Confidence100.00%DateThu Jan 5 11:32:44 GMT 2012
Rank3Aligned Residues368
% Identity10%Templatec2gfpA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60.........70.........80.........90.........100.......
Predicted Secondary structure 





Query SS confidence 















































































Query Sequence  FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL
Query Conservation          
  
          
       

    
 
 
    
  
     
 
 

 
 
  
            
Alig confidence 















































































Template Conservation 
  
               
 

 
      
    
   
   
         
 
 

 


  
             
Template Sequence  LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV
Template Known Secondary structure  TTSSSTTTTTTS





Template Predicted Secondary structure 





Template SS confidence 















































































   10.........20.........30.........40.........50.........60.........70.........80.........
 
   108.110.........120.........130.........140.........150.........160.........170.........180.......
Predicted Secondary structure 









Query SS confidence 















































































Query Sequence  FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD
Query Conservation                      
                                    
      
   
           
Alig confidence 





...






































































Template Conservation     
  ...   
     
 
                                                           
Template Sequence  AVTTSS. . . LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYL
Template Known Secondary structure  ...TSS

SSS
Template Predicted Secondary structure 


...









































Template SS confidence 















































































   90..... ....100.........110.........120.........130.........140.........150.........160......
 
   188.190.........200.........210.........220.........230.........240.........250.........260.......
Predicted Secondary structure 

















































Query SS confidence 















































































Query Sequence  VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQ
Query Conservation                                                                                  
Alig confidence 

















...........................


































Template Conservation                    ...........................                                   
Template Sequence  FLLVLCAGVTFSMARWMP. . . . . . . . . . . . . . . . . . . . . . . . . . . ETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGG
Template Known Secondary structure 




SS
...........................

STTT




TTT
ST
Template Predicted Secondary structure  ...........................
















Template SS confidence 















































































   167..170.........180.... .....190.........200.........210.........
 
   268.270.........280.........290.........300.........310.........320.........330.........340.......
Predicted Secondary structure 


















































Query SS confidence 















































































Query Sequence  FCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG
Query Conservation                                                                                  
Alig confidence 















































































Template Conservation                                                                                  
Template Sequence  LAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNV
Template Known Secondary structure 
S
SSTTTTTTSSSSS
Template Predicted Secondary structure 
























































Template SS confidence 















































































   220.........230.........240.........250.........260.........270.........280.........290.........
 
   348.350.........360.........370.........380... ......390.........400.........410.........420.....
Predicted Secondary structure  .
Query SS confidence 



































.









































Query Sequence  HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYG. SSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI
Query Conservation            
                         .         
  
 
 
 
 
 
  
                
Alig confidence 



































.









































Template Conservation                               
   
            
      
 
 
                     
Template Sequence  WTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVL
Template Known Secondary structure  TSSTTT

STT
TT
Template Predicted Secondary structure 
Template SS confidence 














































































   300.........310.........320.........330.........340.........350.........360.........370........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions