Job Description P52141 Confidence 9.86% Date Thu Jan 5 12:05:46 GMT 2012 Rank 22 Aligned Residues 71 % Identity 24% Template c1a31A_ PDB info PDB header:isomerase/dna Chain: A: PDB Molecule:protein (topoisomerase i); PDBTitle: human reconstituted dna topoisomerase i in covalent complex2 with a 22 base pair dna duplex Resolution 2.10 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.					.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.											.
Predicted Secondary structure																								.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Q	E	G	N	Q	L	H	Y	L	A	D	R	A	S	I	T	G	K	F	S	D	.	.	.	.	A	E	C	P	K	L	D	V	V	F	P	H	F	I	S	Q	I	E	S	M	L	T	T	G	E	L	N	P	R	H	A	Q	C	V	T	L	Y	H	N	G	F	T	C	.	.	.	.	.	.	.	.	.	.	E
Query Conservation																								.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Alig confidence																					.			.	.	.	.																											.																	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.																																	.
Template Sequence		I	Q	G	S	I	K	Y	I	M	L	N	P	S	S	R	I	K	G	E	.	K	D	W	Q	K	Y	E	T	A	R	R	L	K	K	C	V	D	K	I	R	N	Q	Y	R	E	D	W	K	S	K	E	M	.	K	V	R	Q	R	A	V	A	L	Y	F	I	D	K	L	A	L	R	A	G	N	E	K	E	E	G	E
Template Known Secondary structure		T	T								B		T	T	S						.																											T	T		S			.																									T	T	T
Template Predicted Secondary structure																					.																																	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.		.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470		.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
			87	.	.	90	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	A	D	T	L	G	S	C
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		T	A	D	T	V	G	C	C
Template Known Secondary structure		S						G	G
Template Predicted Secondary structure
Template SS confidence
		498	.	500	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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