Job Description P27240 Confidence 99.30% Date Thu Jan 5 11:43:19 GMT 2012 Rank 247 Aligned Residues 179 % Identity 13% Template c4aaaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:cyclin-dependent kinase-like 2; PDBTitle: crystal structure of the human cdkl2 kinase domain Resolution 1.53 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	N	I	N	I	I	K	V	F	R	S	I	D	D	T	K	V	M	L	I	D	T	D	Y	G	K	L	I	L	K	V	F	S	P	K	V	K	R	N	E	R	F	F	K	S	L	L	K	G	D	Y	Y	E	R	L	F	E	Q	T	Q	K	V	R	N	E	G	L	N	T	L	N	D	F	Y	L	L	A	E	R	K
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	Y	E	N	L	G	L	V	G	E	G	S	Y	G	M	V	M	K	C	R	N	K	D	T	G	R	I	V	A	I	K	K	F	L	E	S	D	D	D	K	M	V	K	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	R	E	I	K	L	L	K	Q	L	R	H	E	N	L	V	N	L	L	E
Template Known Secondary structure		G	G							G	G	G	G	T	T	S	S							T	T	T											S		S	S								.	.	.	.	.	.	.	.	.	.	.	.	.														T	T	B
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.														.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.									.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.																																					.
Query SS confidence																									.	.	.	.	.	.	.	.																																					.
Query Sequence		T	L	R	F	V	H	T	Y	I	M	I	I	E	Y	I	D	G	I	E	L	C	D	M	.	.	.	.	.	.	.	.	P	D	I	D	D	A	L	K	N	K	I	Q	Q	S	I	N	A	L	H	Q	H	G	M	V	S	G	D	P	H	R	G	N	F	I	I	K	.	N	G	E	V	R	I	I	D	L	S	G	K
Query Conservation																									.	.	.	.	.	.	.	.																																					.
Alig confidence																									.	.	.	.	.	.	.	.																																					.
Template Conservation
Template Sequence		V	C	K	K	K	K	R	W	Y	L	V	F	E	F	V	D	H	T	I	L	D	D	L	E	L	F	P	N	G	L	D	Y	Q	V	V	Q	K	Y	L	F	Q	I	I	N	G	I	G	F	C	H	S	H	N	I	I	H	R	D	I	K	P	E	N	I	L	V	S	Q	S	G	V	V	K	L	C	D	F	G	F	A
Template Known Secondary structure						T	T										S										S	T	T																								T	T								G	G	G					T	T	S								T	T
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		R	A	S	A	Q	R	K	A	K	D	R	I	D	L	E	.	R	H	Y	G	I	K	N	E	I	R	D	L	G	Y	Y	L	L	V	Y	R	K	K	M	R	N	F
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		E	V	A	T	R	W	Y	R	A	P	E	L	L	V	G	D	V	K	Y	G	K	A	V	D	V	W	A	I	G	C	L	V	T	E	M	F	M	G	E	P	L	F
Template Known Secondary structure							T	T							T	T		T	T			T																	S	S		S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions