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Job DescriptionP27240
Confidence99.91%DateThu Jan 5 11:43:19 GMT 2012
Rank42Aligned Residues207
% Identity13%Templatec3g0eA_
PDB info PDB header:transferaseChain: A: PDB Molecule:mast/stem cell growth factor receptor; PDBTitle: kit kinase domain in complex with sunitinib
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50. ........60.........70......
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Query Sequence  IQKSKIKDLVVFTDENNSKYLNVLNDFLSYNINIIKVFRSIDDTKVMLID. . . . . TDYGKLILKVFSPKVKRNERFFKSL
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Template Sequence  VVEEINGNNYVYIDPTQLPYDHKWE. FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREAL
Template Known Secondary structure  TT

GGGS


GGGB.

GGG
SSSSSSTT

TT

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   559560.........570.........580... ......590.........600.........610.........620.........630.......
 
   77..80.........90.........100.........110.........120.........130....
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Query Sequence  LKGDYYERLFEQTQKVRNEGLNTLNDFYLLAERKTLRFVHTYIMIIEYIDGIELCDMP. . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  MSELKVLSYLG. . . . . . . . . . . . . NHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDEL
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TTB


SSSS


TT
BGGGGS
SSS



BTTB

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   638.640........ .650.........660.........670.........680.........690.........700....
 
   135....140.........150.........160......... 170.........180...... ...190.....
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Query Sequence  . . . . DIDDALKNKIQQSINALHQHGMVSGDPHRGNFIIK. NGEVRIIDLSGKRASAQ. . . . . . . . . . . . . . RKAKDRIDL
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Template Sequence  ALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIF
Template Known Secondary structure 


TT
S

SGGGTTT


GGG

GGG
TTSTT
GGGS
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   763......770.........780.........790.........800.........810.........820.........830.........840..
 
   196...200.........210....... ..220..
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Query Sequence  ERHYGIKNEIRDLGYYLLVYRK. KMRNF
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Template Sequence  NCVYTFESDVWSYGIFLWELFSLGSSPY
Template Known Secondary structure  T


TTT

SS
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   843......850.........860.........870
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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