Return to main results Retrieve Phyre Job Id

Job DescriptionP27240
Confidence99.90%DateThu Jan 5 11:43:19 GMT 2012
Rank52Aligned Residues170
% Identity14%Templatec2zv2A_
PDB info PDB header:transferase/transferase inhibitorChain: A: PDB Molecule:calcium/calmodulin-dependent protein kinase kinase 2; PDBTitle: crystal structure of human calcium/calmodulin-dependent protein kinase2 kinase 2, beta, camkk2 kinase domain in complex with sto-609
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.........60.........70.........80.........90.........100.........110
Predicted Secondary structure 






















Query SS confidence 















































































Query Sequence  YNINIIKVFRSIDDTKVMLIDTDYGKLILKVFSPKVKRNERFFKSLLKGDYYERLFEQTQKVRNEGLNTLNDFYLLAERK
Query Conservation        
 
       
  
         
                                             
    
Alig confidence 








..

























....................






















Template Conservation    
 
   
..
  
 
       
   



 
   ....................     
   
  
 
 


    
Template Sequence  NQYTLKDEI. . GKYGVVKLAYNENDNTYYAMKVLSKK. . . . . . . . . . . . . . . . . . . . EQVYQEIAILKKLDHPNVVKLVE
Template Known Secondary structure  TT..


TTTT

....................
T


TTB

Template Predicted Secondary structure 

..








....................






Template SS confidence 















































































   164.....170.. .......180.........190........ .200.........210.........220.
 
   111....... .120.........130... ......140.........150.........160......... 170.........180
Predicted Secondary structure 


..







.......









.




Query SS confidence 







. .














. . . . . . .



































.










Query Sequence  TLRFVHTY. . IMIIEYIDGIELCDM. . . . . . . PDIDDALKNKIQQSINALHQHGMVSGDPHRGNFIIK. NGEVRIIDLSG
Query Conservation          .. 
  
   
      .......          
      

     
 
    
    .       
   
Alig confidence 







..














.......



































.










Template Conservation              
 
      
                
   
   
  

   
 
 

   

         
 
 
 
Template Sequence  VLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGV
Template Known Secondary structure 
SSSS

TT
BS

SS
SS


TT




GGG
TTS



TT
Template Predicted Secondary structure 











































Template SS confidence 















































































   255....260.........270.........280.........290.........300.........310.........320.........330....
 
   181..... ...190........ .200.........210.........220..
Predicted Secondary structure 





........







.......




Query SS confidence 





. . . . . . . .











. . . . . . .























Query Sequence  KRASAQ. . . . . . . . RKAKDRIDLERH. . . . . . . YGIKNEIRDLGYYLLVYRKKMRNF
Query Conservation        ........            .......     
    
             
Alig confidence 





........











.......























Template Conservation                        

              





 





 
  

Template Sequence  SNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPF
Template Known Secondary structure 

SSSS




S
GGG

GGG

TT


SSS
SS
Template Predicted Secondary structure 































Template SS confidence 
























































   335....340.........350.........360.........370.........380.........390.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions