Job Description P27240 Confidence 99.92% Date Thu Jan 5 11:43:19 GMT 2012 Rank 35 Aligned Residues 179 % Identity 14% Template c2a1aB_ PDB info PDB header:protein synthesis/transferase Chain: B: PDB Molecule:interferon-induced, double-stranded rna-activated protein PDBTitle: pkr kinase domain-eif2alpha complex Resolution 2.80 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	D	F	L	S	Y	N	I	N	I	I	K	V	F	R	S	I	D	D	T	K	V	M	L	I	D	T	D	Y	G	K	L	I	L	K	V	F	S	P	K	V	K	R	N	E	R	F	F	K	S	L	L	K	G	D	Y	Y	E	R	L	F	E	Q	T	Q	K	V	R	N	E	G	L	N	T	L	N	D	F	Y
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	K	R	F	G	M	D	F	K	E	I	E	L	I	G	S	G	G	F	G	Q	V	F	K	A	K	H	R	I	D	G	K	T	Y	V	I	K	R	V	K	Y	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	A	E	R	E	V	K	A	L	A	K	L	D	H	V	N
Template Known Secondary structure																				S	S									S	S	S													S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G							T	T				T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.																				.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.													.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.											.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	A	E	R	K	T	L	R	F	.	.	.	.	.	.	.	.	.	.	.	.	V	H	T	Y	I	M	I	I	E	Y	I	D	G	I	E	L	C	D	M	.	.	.	.	.	.	.	.	.	.	P	D	I	D	D	A	L	K	N	K	I	Q	Q	S	I	N	A	L	H	Q	H	G	M	V	S	G	D	P	H
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	H	Y	N	G	C	W	D	G	F	D	Y	D	P	E	T	S	S	R	S	K	T	K	C	L	F	I	Q	M	E	F	C	D	K	G	T	L	E	Q	W	I	E	K	R	R	G	E	K	L	D	K	V	L	A	L	E	L	F	E	Q	I	T	K	G	V	D	Y	I	H	S	K	K	L	I	N	R	D	L	K
Template Known Secondary structure		B														T	T																		T	T		B									T	T	S																								T	T				T	T		S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.											.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure									.																														.	.	.	.	.	.	.	.	.	.
Query SS confidence									.																														.	.	.	.	.	.	.	.	.	.
Query Sequence		R	G	N	F	I	I	K	.	N	G	E	V	R	I	I	D	L	S	G	K	R	A	S	A	Q	R	K	A	K	D	R	I	D	L	E	R	H	.	.	.	.	.	.	.	.	.	.	Y	G	I	K	N	E	I	R	D	L	G	Y	Y	L	L	V	Y	R	K	K	M	R	N	F
Query Conservation									.																														.	.	.	.	.	.	.	.	.	.
Alig confidence									.																														.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	S	N	I	F	L	V	D	T	K	Q	V	K	I	G	D	F	G	L	V	T	S	L	K	N	D	G	K	R	R	S	K	G	T	L	R	Y	M	S	P	E	Q	I	S	S	Q	D	Y	G	K	E	V	D	L	Y	A	L	G	L	I	L	A	E	L	L	H	V	C	D	T	A
Template Known Secondary structure		G	G	G						T	T								T	T				S	S			S						S			T	T	S						S		S				T																S			S	S
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions