Job Description P54745 Confidence 29.81% Date Thu Jan 5 12:06:03 GMT 2012 Rank 108 Aligned Residues 179 % Identity 19% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		F	Y	R	A	H	W	R	D	Y	K	N	D	Q	V	R	I	M	M	N	L	T	T	L	T	H	R	D	A	L	C	L	N	A	R	F	T	S	R	E	E	A	I	H	A	L	T	Q	R	L	A	A	L	G	K	I	S	S	T	E	Q	F	L	E	E	V	Y	R	R	.	.	E	S	L	G	P	T	A	L	G	E
Query Conservation																																																																						.	.
Alig confidence																																																									.	.	.											.	.
Template Conservation																																																									.	.	.
Template Sequence		M	F	G	K	L	R	E	K	L	K	S	F	V	K	R	V	E	E	E	V	E	K	E	E	E	E	V	E	L	T	V	E	I	K	E	K	D	V	D	K	A	L	D	E	L	E	I	D	L	L	E	A	D	V	A	.	.	.	L	E	V	V	D	A	L	R	E	K	I	K	Q	K	L	V	G	K	K	V	R	I
Template Known Secondary structure																										T	T																									T	T	T			.	.	.																T	T					T
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	A	V	P	H	G	K	T	A	A	V	K	E	A	A	F	A	V	A	T	L	S	E	P	L	Q	W	E	G	V	D	G	P	E	A	V	D	L	V	V	L	L	A	I	P	P	N	E	A	G	T	T	H	M	Q	L	L	T	A	L	T	T	R	L	A	D	D	E	I	R	A	R	I	Q	S	A	T	T	P
Query Conservation
Alig confidence																																																	.						.	.
Template Conservation																																																	.						.	.
Template Sequence		G	T	D	K	G	K	I	I	E	E	A	V	K	E	A	V	S	E	I	L	E	T	S	R	R	I	D	L	I	E	E	I	R	K	A	E	K	P	Y	V	I	M	F	V	G	F	N	.	G	S	G	K	T	.	.	T	T	I	A	K	L	A	N	W	L	K	N	H	G	F	S	V	V	I	A	A	S	D	T	F
Template Known Secondary structure		T	S																		T			S											T	S		S										T	.	T	S	S			.	.													T	T										T	T
Template Predicted Secondary structure																																																	.						.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	L	L	S	A	L	D	D	K	G	G	T	Q	P	S	A	S	F	S	N	A	P	T	I	V	C	V	T	A	C	P	A	G	I	A	H	T	Y	M	A	A	E	Y	L	E	K	A	G	R	K	L	G	V	N	V	Y	V	E	K	Q	G	A	N
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	E	Q	L	E	E	H	A	K	R	I	G	V	K	V	I	K	H	S	Y	G	A	D
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T							S	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.																																						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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