Job Description P0A6T3 Confidence 99.97% Date Thu Jan 5 11:03:52 GMT 2012 Rank 25 Aligned Residues 253 % Identity 17% Template c2v34B_ PDB info PDB header:transferase Chain: B: PDB Molecule:4-diphosphocytidyl-2c-methyl-d-erythritol kinase; PDBTitle: ispe in complex with cytidine and ligand Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		21	.	.	.	.	.	.	.	.	30	.					.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure													.	.	.	.							.
Query SS confidence													.	.	.	.							.
Query Sequence		H	T	I	Q	A	P	G	R	V	N	L	.	.	.	.	I	G	E	H	T	D	.	Y	N	D	G	F	V	L	P	C	A	I	D	Y	Q	T	V	I	S	C	A	P	R	D	D	R	K	V	R	V	M	A	A	D	Y	E	N	Q	L	D	E	F	S	L	D	A	P	I	V	A	H	E	N	Y	Q	W	A	N	Y
Query Conservation													.	.	.	.							.
Alig confidence													.	.	.	.							.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	K	V	L	S	P	A	K	I	N	L	G	L	W	V	L	G	R	L	P	S	G	Y	H	E	I	L	T	L	Y	Q	E	I	P	F	Y	D	E	I	Y	I	R	E	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	V	E	T	N	I	G	I	P	Q	E	E	N	L
Template Known Secondary structure																					T	T	S																						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S				G	G	G
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																					.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	G	V	V	K	H	L	Q	L	R	N	N	S	F	G	G	V	D	M	V	I	S	G	N	V	P	Q	G	A	G	L	S	S	S	A	S	L	E	V	A	V	G	T	V	L	Q	Q	L	Y	H	L	P	L	D	G	A	Q	I	A	L	N	G	Q	E	A	E	N	Q	F	V	G	C	N	C	G	I	M	D	Q
Query Conservation
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Y	K	G	L	R	E	F	E	R	I	T	G	I	E	I	N	Y	S	I	F	I	Q	K	N	I	P	P	G	A	G	L	G	G	G	S	S	N	L	A	V	V	L	K	K	V	N	E	L	L	G	S	P	L	S	E	E	E	L	R	E	L	V	G	S	I	.	.	.	.	.	.	.	.	.	.	S	A	D	A
Template Known Secondary structure																											S		T	T	S	S	S																		T	T			S													.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.											.	.	130	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	S	A	L	G	K	K	D	H	A	L	L	I	D	C	R	S	L	G	T	K	A	V	S	M	P	K	G	V	A	V	V	I	I	N	S	N	F	K	R	T	L	V	G	S	E	Y	N	T	R	R	E	Q	C	E	T	G	A	R	F	F	Q	Q	P	A	L	R	D	V	T	I	E	E	F	N	A	V	A	H
Query Conservation
Alig confidence									.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	F	F	L	L	G	K	.	.	.	S	A	I	G	R	G	K	G	E	V	L	E	P	V	E	T	E	I	S	G	K	I	T	L	V	I	P	Q	V	S	S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	G	R	V	Y	S	S	L	R	E	E	H	F	V	T	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T		S	.	.	.						T	T	T	T											S								S	S					.	.	.	.	.	.	.	.	.	.	.	.						T			G	G	G				.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.													.	.	.	.	.	.	.	.	180	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	D	P	I	V	A	K	R	V	R	H	I	L	T	E	N	A	R	T	V	E	A	A	S	A	L	E	Q	G	D	L	K	R	M	G	E	L	M	A	E	S	H	A	S	M	R	D	D	F	E	I	T	V	P	Q	I	D	T	L	V	E	I	V	K	A	V	I	G	D	K	G	G	V	R	M	T	G	G	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.														.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.														.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	Y	A	E	E	K	I	Q	R	I	I	S	G	E	V	E	E	I	E	N	V	L	G	D	I	A	R	E	L	.	.	.	.	.	.	.	Y	P	E	I	N	E	V	Y	R	F	V	E	Y	.	.	.	L	G	F	K	P	F	V	S	G	S	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T		G	G	G			B										.	.	.	.	.	.	.														.	.	.	T	T							T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.														.	.	.
Template SS confidence
																		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.								.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	G	C	I	V	A	L	I	P	E	E	L	V	P	A	V	Q	Q	A	V	A
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	S	T	V	Y	F	F	G	G	A	S	E	E	L	K	K	A	A	K	M	R
Template Known Secondary structure		.	.	S					S	S
Template Predicted Secondary structure		.	.
Template SS confidence
				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions