Job Description P0A6T3 Confidence 99.96% Date Thu Jan 5 11:03:52 GMT 2012 Rank 27 Aligned Residues 260 % Identity 20% Template c1uekA_ PDB info PDB header:transferase Chain: A: PDB Molecule:4-(cytidine 5'-diphospho)-2c-methyl-d-erythritol PDBTitle: crystal structure of 4-(cytidine 5'-diphospho)-2c-methyl-d-2 erythritol kinase Resolution 1.70 Å

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		23	.	.	.	.	.	.	30	.	.					.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.						.
Query SS confidence												.	.	.	.						.
Query Sequence		I	Q	A	P	G	R	V	N	L	I	.	.	.	.	G	E	H	T	D	.	Y	N	D	G	F	V	L	P	C	A	I	D	Y	Q	T	V	I	S	C	A	P	R	D	D	R	K	V	R	V	M	A	A	D	Y	E	N	Q	L	D	E	F	S	L	D	A	P	I	V	A	H	E	N	Y	Q	W	A	N	Y	V	R
Query Conservation												.	.	.	.						.
Alig confidence												.	.	.	.						.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	A	P	A	K	V	N	L	G	L	S	V	R	F	R	R	E	D	G	Y	H	E	L	H	T	L	F	A	P	F	S	L	A	D	R	L	V	V	E	P	V	S	S	G	L	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	P	Y	G	R	E	N	L	A	Y
Template Known Secondary structure																			T	T	S	S																						S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	T	T	G	G	G	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50																						.	.	.	.	.	.	.	.	.	60	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	V	K	H	L	Q	L	R	N	N	S	F	G	G	V	D	M	V	I	S	G	N	V	P	Q	G	A	G	L	S	S	S	A	S	L	E	V	A	V	G	T	V	L	Q	Q	L	Y	H	L	P	L	D	G	A	Q	I	A	L	N	G	Q	E	A	E	N	Q	F	V	G	C	N	C	G	I	M	D	Q	L	I
Query Conservation
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	A	S	L	Y	L	E	A	A	G	Q	P	G	G	V	R	I	L	L	E	K	R	I	P	E	G	A	G	L	G	G	G	S	S	D	A	A	Q	V	L	L	A	L	Q	A	L	Y	P	A	E	V	D	L	F	A	L	A	R	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	D	V	P	F
Template Known Secondary structure											T	T													S		S	S	S	S	S																		S		S												.	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.														.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	G	K	K	D	H	A	L	L	I	D	C	R	S	L	G	T	K	A	V	S	M	P	K	G	V	A	V	V	I	I	N	S	N	F	K	R	T	L	V	G	S	E	Y	N	T	R	R	E	Q	C	E	T	G	A	R	F	F	Q	Q	P	A	L	R	D	V	T	I	E	E	F	N	A	V	A	H	E	L
Query Conservation
Alig confidence							.	.	.																		.																.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.																		.																.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Sequence		F	L	L	G	R	.	.	.	G	A	E	A	R	G	V	G	E	R	L	K	P	L	A	L	P	.	P	V	P	A	V	V	F	F	P	G	L	R	V	P	T	.	.	.	.	.	.	.	.	.	.	.	.	P	L	V	Y	R	A	V	R	P	E	D	F	G	P	D	L	P	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S	.	.	.						T	T	T	T									.																.	.	.	.	.	.	.	.	.	.	.	.						T			G	G	G							.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.																		.																.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.													.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	I	V	A	K	R	V	R	H	I	L	T	E	N	A	R	T	V	E	A	A	S	A	L	E	Q	G	D	L	K	R	M	G	E	L	M	A	E	S	H	A	S	M	R	D	D	F	E	I	T	V	P	Q	I	D	T	L	V	E	I	V	K	A	V	I	G	D	K	G	G	V	R	M	T	G	G	G	F	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.															.	.												.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.															.	.												.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	A	I	L	E	A	L	A	R	G	E	E	P	P	Y	W	N	S	L	E	G	P	A	F	R	L	.	.	.	.	.	.	.	F	P	E	L	K	E	V	R	G	R	M	R	A	L	.	.	G	L	R	G	V	L	M	S	G	S	G	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T				S			B	T	T								.	.	.	.	.	.	.		T												T	.	.	T								T	T	S	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.															.	.												.	.
Template SS confidence
																			183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.								210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.
		338	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		G	C	I	V	A	L	I	P	.	E	E	L	V	P	A	V	Q	Q	A	V	A	E	Q	Y	E	A	K	T	G	I	K	E	T	F	Y	V	C	K	P	S	Q	G
Query Conservation										.
Alig confidence										.												.	.	.	.	.					.	.	.
Template Conservation																						.	.	.	.	.					.	.	.
Template Sequence		S	A	F	F	G	L	A	E	G	P	D	H	A	R	R	A	A	E	A	L	.	.	.	.	.	R	A	W	G	.	.	.	R	A	W	A	G	T	L	G	G	G
Template Known Secondary structure		S							S	S												.	.	.	.	.	T	T	T	S	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.					.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.						.	.	.	.				.	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions