 |
Job Description | P27862 | Confidence | 16.18% | Date | Thu Jan 5 11:44:25 GMT 2012 |
Rank | 37 | Aligned Residues | 79 |
% Identity | 10% | Template | c3t18D_ |
PDB info |
PDB header:transferase | Chain: D: PDB Molecule:aminotransferase class i and ii; |
PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548.
|
Resolution | 2.86 Å |
|
 |
  |   |
114 | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | |
. | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  | . |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | K | A | Y | G | G | G | V | N | Q | A | L | R | Q | L | T | T | Q | R | K | T | P | L | T | E | Y | T | L | Q | C | E | Y | H | Q | L | T | G | I | E | A | L | L | G | Q | C | D | G | K | I | I | N | S | D | Y | Q | A | F | V | L | L | R | V | A | . |
L | P | A | A | K | V | A | E | F | S | A | K | L | A | D | F |
Query Conservation |   |
|
|
|
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|   |
|   |
|   | . |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|
|
| . | . |
|   |   |   |
|
|
|
|   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |   |
Template Sequence |   |
L | K | S | R | A | D | V | F | V | T | A | A | K | E | N | K | L | T | X | I | P | Y | F | G | G | F | F | T | F | I | P | T | D | K | A | F | D | I | V | K | D | L | E | K | E | N | I | F | T | I | P | . |
. |
S | A | K | G | I | R | V | A | I | C | G | V | G | E | E | K | I | P | K | L | V | Q | R | L | A | F | Y |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
|
|
|
|
| S | S | S |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  | T | T | T |  |  |
|  |  | . | . |
| S | S |  |  |  |  |  | S | T | T | S |
| T | T | T |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  | . | . |
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
329 | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | |
|
380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . |
  |
  |   |
193 | . |
Predicted Secondary structure |   |
 |
|
Query SS confidence |   |
|
|
Query Sequence |   |
S | R |
Query Conservation |   |
|   |
Alig confidence |   |
|
|
Template Conservation |   |
  |   |
Template Sequence |   |
T | N |
Template Known Secondary structure |   |
 |  |
Template Predicted Secondary structure |   |
 |
|
Template SS confidence |   |
|
|
  |   |
407 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|