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Job DescriptionP38683
Confidence99.97%DateThu Jan 5 11:58:14 GMT 2012
Rank52Aligned Residues251
% Identity14%Templatec3clkB_
PDB info PDB header:transcription regulatorChain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum
Resolution2.08 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   50.........60.........70.........80.........90.........100.........110.........120.........
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Query Sequence  LYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVASLPVIE
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Template Sequence  VIAAVVSNFAQQILDGIQEEAHKNGYNLIIVYE. . . . . . . EQKHALLTAIERPVXGILLLSIALTDDNLQLLQSSDVPYC
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   63......70.........80.........90..... ....100.........110.........120.........130.....
 
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Query Sequence  LVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIA. LGDND
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Template Sequence  FLSXGFDDDR. PFISSDDEDIGYQATNLLINEGHRQ. . . IGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDY
Template Known Secondary structure  S


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   146...150..... ....160.........170.........180 .........190.........200.........210.........220.
 
   209210.........220.........230.........240.... .....250.........260.........270.........280.
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Query Sequence  IEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGR. . . . . . . NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQ
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Template Sequence  SYTSGEQAXKAFGKNTDLTGIIA. . ASDXTAIGILNQASSFGIEVPKDLSIVSIDGTE. . . XCKITRPQLTSISQDFFQX
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   222.......230.........240.... .....250.........260.........270....... ..280.........290......
 
   282.......290....... ..300.........310......
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Query Sequence  GELAVEQAIRQLQGQS. . VSDNVSPPILVLTPKNADR
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Template Sequence  GVTGVQQIHQSVKNGSNRIVSQQFIPVNPVIRKSTAR
Template Known Secondary structure  TS










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   297..300.........310.........320.........330...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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